Gene Bphy_5954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_5954 
Symbol 
ID6247526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp477303 
End bp479336 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content65% 
IMG OID642597662 
ProductFis family GAF modulated sigma54 specific transcriptional regulator 
Protein accessionYP_001862064 
Protein GI186470746 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0983903 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTCAT GCCAGCCGCT CGCGGGACAA ACCAGCCAGG TCGAAGCCAT CATGCGTACG 
CGCCCTGGCG GATTCGCACC GAGCGCGCCA GTGGTTCGCT CATGGACGCG CTGCATCGAA
GACTACAGAC TCGATCCCGA CGTGTGCCTG CCGCCTCCCG TGATGACCAG CGCCGAACTC
GCATCGCGAC GCGAACAGAA TGCCAGTCTG GTCGATTGCG CGAAGCTCGA AATGGCCACG
CTTTATCAGC AGCTCGGCGA CTCGGAGCTT GCCGTCGTGT TGACGGATAG CGATGGCGTG
ATCCTGCATC TCGCGTCGTC GCCCGAGTTT GCAGGCGAGG TCGAGGACTG GGGACTGTGC
GCGGGCGCCG TGTGGAACGA ACGCGAAGCG GGCACGAACG GCATGGGCAC CTGCCTCGCG
GAAGGCGAAG CGATCGCCGT GCGTCAGCAC GAACATTTCT ATCAGCGCTA TACCTCGCTC
ACATGCGCCG CCGTGCCCGT ATTCGACGAA GGAGGCTCCA TCGCGGGCGT GCTCGACGTC
ACCAGCCGTT CGCCGCTGTT GCAGCAGCAT TCGCTCGTGC TGGTCGGCAT GTCGCGGCAG
ATGATCGAAA ACCGTCTGCT CGACGCCCGT CATACACACG CGTTCCGTAT TCAGTTTCAC
AGCAGGCCCG AGTTCGTCGG CACCTTGCAT GCCGGCAAGC TCACCGTCGA CGATGACGGC
ATGATTCTCG GCGCGAACCG CAGCGCGCTC GCGCAACTCG GCTTCGCGAC GCTCGACGAG
ATCGCCGGCA AGCCGGTCAC CGACGTTTTC AATGCGTCGC TGGCCGAGAT CGTCGCGCGC
AGCACGCGCA GTTCGTTCTA TCCCGTCGCG ATCTATCGCA CGCATGCGTC GAGCCGCTTC
TTCGTCGTCG CTCAGGAGCC GCGCGATCGT GCCGCACGCG AAGCTATCGC GCCCGCGCGT
GCGGAAGCAT CGAACCACGA TGCGTCGTCG GCACTCACGC GGCGTCCGGC TCGCGCAACG
CGCACGGCGA GCCCATTGCG CCAGGGCACA GCGCGCGTGG AATTCGGCGA TGCGCAGATC
GCCAGCCAGT TCGATCTCGG CGCGCGTGTG ATCGATCGCG GTATCGCGGT GCTCGTTCAC
GGCGAAACGG GCAGCGGCAA GGAGGTGTTC GCCAACGCAC TGCATGCCGC AAGCGAACGC
AGCAACGGTC CGTTCGTCGC GGTCAACTGT GCTTCGCTGC CGGAACATCT GATCGAGAGC
GAACTGTTCG GCTATCGCGC GGGCGCTTTC ACGGGCGCGC AGCGCGAAGG ACGGCGCGGC
AAGATTCTGC AGGCCGACGG CGGCACGCTG TTTCTCGATG AAATCGGCGA CATGCCGCTC
GCCCTGCAAG CGCGGCTGCT GCGCGTGCTC GAAGAGCGCG AAGTCACGCC GCTCGGTTCA
GAATCTGTCG TCAAGGTCGA CTTTCAGCTG GTGAGCGCGA GTCATCGCGA TCTCAACGAA
CTCGTCGAAA GCGGGCAGTT CCGTGAGGAT CTCTACTATC GGCTCAATGG CGTCATGCTG
GAGCTTCCGC CCCTGCGCGC CCGCAAGGAC AAGCTCGCGC TGATCCGGCA TTTGCTGGAA
AAGGAGCGCA CGCCTGCGCT CCGACTTTCG GCGGACGTGC GACAGATTCT GCTCGACAGC
GACTGGCCCG GCAATATCCG TCAGTTGCGC AACGTGCTGC GCACGGCGAC GGCGCTCTGC
GACGGCGATG AACTCACCAC GGCGCATCTG CCCGCGTGGC TCGTGCAGCG CGAGAAAAAC
CTGAATCGCC CGCGAGCCGC CGGCGCGTCC ACTGCCCTCT CCGACACCGA CGATTGCGCC
GATATGGAAG AGGTGTCGAA CGCGCCGCTC AACGCGATTC TGCAGGCCGA ACGCGAGGCG
CTGCTCGCGT TGCTCGACAA GCATCGCTGG AACGTGAGCC AGGTTGCGCT CGCGCTCGGC
ATCACACGCA ATACGCTCTA CCGGAAAATG AGACGCGTGA ACATCAAGAC GTGA
 
Protein sequence
MSSCQPLAGQ TSQVEAIMRT RPGGFAPSAP VVRSWTRCIE DYRLDPDVCL PPPVMTSAEL 
ASRREQNASL VDCAKLEMAT LYQQLGDSEL AVVLTDSDGV ILHLASSPEF AGEVEDWGLC
AGAVWNEREA GTNGMGTCLA EGEAIAVRQH EHFYQRYTSL TCAAVPVFDE GGSIAGVLDV
TSRSPLLQQH SLVLVGMSRQ MIENRLLDAR HTHAFRIQFH SRPEFVGTLH AGKLTVDDDG
MILGANRSAL AQLGFATLDE IAGKPVTDVF NASLAEIVAR STRSSFYPVA IYRTHASSRF
FVVAQEPRDR AAREAIAPAR AEASNHDASS ALTRRPARAT RTASPLRQGT ARVEFGDAQI
ASQFDLGARV IDRGIAVLVH GETGSGKEVF ANALHAASER SNGPFVAVNC ASLPEHLIES
ELFGYRAGAF TGAQREGRRG KILQADGGTL FLDEIGDMPL ALQARLLRVL EEREVTPLGS
ESVVKVDFQL VSASHRDLNE LVESGQFRED LYYRLNGVML ELPPLRARKD KLALIRHLLE
KERTPALRLS ADVRQILLDS DWPGNIRQLR NVLRTATALC DGDELTTAHL PAWLVQREKN
LNRPRAAGAS TALSDTDDCA DMEEVSNAPL NAILQAEREA LLALLDKHRW NVSQVALALG
ITRNTLYRKM RRVNIKT