| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5923 |
|---|
| Symbol | |
|---|
| ID | 6247495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 442937 |
|---|
| End bp | 444388 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642597631 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_001862033 |
|---|
| Protein GI | 186470715 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.520992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.358507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG ATACACGCAA CGCACTCGAA ACCGCTGCGC AACTTGCGCT GGCGTTCCAT
GACGCGCGCG GGTCGCGTCC GACTGGTCCG GTGGCGAGTT TCGGCGAACT GCACGCGGCA
TTCGGCGGCC CGACGCCGGA GCAGGGCGAG CCTGCCAGTG CCGTGATCGC GCGGCTCGCG
GCCATCGCGC AGCCCGGCTT GCTGGGCACG GCGGGGCCGC GCTTCTTCGG CTGGGTTGCG
GGCGGCTCGC ATCCTGCGGG CGTCGCGGCG GACTGGCTCA CGAGCGTCTG GGGGCAGAAT
GCCGCCACTT ACCACGGTGC CCCCGCCGCC GCCGTCGCCG AGCAGGTGGT GGCGCAATGG
CTCCTCGATC TGCTGGATTT GCCGCGCAGT TGTTCGGTCG GCTTCACGAC GGGCGCGACG
ATGAGCAACT TCGTGTGCCT TGCCGCCGCC CGCGACGCCG TGCTGCGCCG TGCGGGCTGG
GACGTCGAAG CCGACGGCCT GTGCGGCGCG CCGCGCATTT CCGTCTATGT CGGCGAAGGC
GTGCACGCAA GCGTGCGTGC CGCGTTGCGC TATCTCGGCA TCGGCGAGCG TTCCGTGATC
GAGGTCGCCG CCGACGAAGC GGGGCGCATG CAGCCGTCCG CATTGCGCGA CGCAGTCGCG
CGGCACGATG GACCGCTGAT CGTCATTGCG CAGGCGGGCC ACATGATGAC GGGCGCGTTC
GATTCCGTCG GCGAGATCGC CGCGTGCGCG CACGAGCATG GCGGATGGGT TCATGTCGAT
GCTGCGTTCG GCCTGTGGGC GCGAGCATGC CCCGAGCGCA TGCATCTCGC GGCGGGCATC
GAACACGCCG ACTCGTGGGC GGCCGACGCC CATAAATGGC TGCAGGCGCC GTACGACACG
GGCTGCGCAT TCGTGCGCGA CGCCGACGCG CACCGGCGCG CGATGTCGAT TCGCGCGAGC
TATCTGCCGC AAGCCGAAGA TGGCGCTCGC GACCCGGCGC ACTACACGCC GGAGCTCTCG
CGGCGTGCGC GGGGCTTTTC GCTGTGGGCA CTGGTGCGCA CGCTCGGACG CGAAGGGATC
GCGGCGATGA TCGCACGGCA TTGCGCGCTG GCGTGCCGTA TCGCGCGCCG GCTTGCACGC
GGGCCGGGCG TCGCGCTGCT CAACGAAGTC GAGTTGAACC AGCTGATCGT GCGTTTCGGT
TCGGCCTACG ATGGCTCGCT CGCCGACGAA CTGACGTTGC GCACAGTCCA GCGCATTCAG
GCTCAGGGCG TATGCGATGT GCGCGAGGCT GTGTGGCAGG GGCGCACGGT GATGCGCCTG
TCGGTCATTT CATGGGCGAC GACGGAGCGC GATGCGGATT GCGCCGCCGA TGCGATCCTG
TCGGTGTGGG ATCAGGTGCA TGGCGAGTAT CTGTGTCAGG AGCGCGAGGC GATGGCGCTG
GCGTTGGGTT GA
|
|---|
| Protein sequence | MADDTRNALE TAAQLALAFH DARGSRPTGP VASFGELHAA FGGPTPEQGE PASAVIARLA
AIAQPGLLGT AGPRFFGWVA GGSHPAGVAA DWLTSVWGQN AATYHGAPAA AVAEQVVAQW
LLDLLDLPRS CSVGFTTGAT MSNFVCLAAA RDAVLRRAGW DVEADGLCGA PRISVYVGEG
VHASVRAALR YLGIGERSVI EVAADEAGRM QPSALRDAVA RHDGPLIVIA QAGHMMTGAF
DSVGEIAACA HEHGGWVHVD AAFGLWARAC PERMHLAAGI EHADSWAADA HKWLQAPYDT
GCAFVRDADA HRRAMSIRAS YLPQAEDGAR DPAHYTPELS RRARGFSLWA LVRTLGREGI
AAMIARHCAL ACRIARRLAR GPGVALLNEV ELNQLIVRFG SAYDGSLADE LTLRTVQRIQ
AQGVCDVREA VWQGRTVMRL SVISWATTER DADCAADAIL SVWDQVHGEY LCQEREAMAL
ALG
|
|---|
| |