| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5343 |
|---|
| Symbol | |
|---|
| ID | 6246828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 2481637 |
|---|
| End bp | 2482722 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642597064 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001861467 |
|---|
| Protein GI | 186474125 |
|---|
| COG category | [K] Transcription
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0342945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCGA CCGTCCCTAA GTGCAGGCAG CAGATCCGGC TGTGCACCGT GCACGACGGC
GCGCGCATCG CGTATGCGAC GTGTGGCAGC GGACCGCCCA TCGTCAAGGC CGCGAACTGG
CTCAGCCACC TGGAGTTCGA TCTCGCGAGC CCCGTATGGA GCCACATGAT CGCGGAGATG
TGCCGCGAGC ACACGCTGAT CCGTTACGAT CAACGCGGTT GCGGGCTGTC GGATCACGAC
GTCGACGACA TTTCGTTCGA CGCATGGAAG CACGACCTGA TTGCCGTGAT CGATGCAAGC
GGTGTCGACC GCTTCGTGCT GCTCGGCATT TCGCAAGGCG CATCGATTGC CATTACGTAC
GCCGTCGCAT TTCCGGAACG CGTCTCGCAT CTGATCCTGC ACGGAGGCTA CGCGCGTGGA
CGGCTTGTCC GCTCGCGCAC CGAGCAGGCG CGCGACGAAG CGCAGACGCT CGCCAAGCTC
GCCGAGATTG GCTGGGGCCA GCACAATCCC GCTTTCCGTC AGTTTTTCAC GACGCAGTTC
ATACCGGGCG GCACGCCGCA ACAGCATCAC TGGTTCAACG AACTCGAACG CATCTCCACG
ACGCCGCACA ACGCCGCGCG CATCATGCGC GTCTTCAACC ACATCGACGT GGTCGATCTG
CTGCCGCATG TGCAGTGCCC GACGCTCGTG CTGCATGCGG TGCGCGACGC ACGCGTGCCA
TTCGAAGAGA GCCGGCTGCT CGCGAGCCTG ATTCCCAACG CGCGCTTCGT GCCGCTCGAA
AGCGACAACC ATCTGCCGCT CGAATGCGAA AGCGCATGGC AGCGGTGGCG CGATGAAGTG
CGCGCGTTCT TGCCGCCTGC ACGACACATC GACCCTGTGT TTTCAGCGCT TACTCGACGC
GAGCGCGAGA TCGTCGAACT GATCGCGGGC GGCCGCGACA ATGCGCAGAT CGCCGCGCGG
CTCGGCTTGT CGGAAAAGAC GGTGCGCAAT CACATCACCA ACATCTTCGC CAAGCTCGAA
GTGGAAAGCC GCGCCCAGGC CATCGTGCTC GCGCGCAAGG CGGGCTTCGA CGCGCCCGCT
GCATAA
|
|---|
| Protein sequence | MSATVPKCRQ QIRLCTVHDG ARIAYATCGS GPPIVKAANW LSHLEFDLAS PVWSHMIAEM
CREHTLIRYD QRGCGLSDHD VDDISFDAWK HDLIAVIDAS GVDRFVLLGI SQGASIAITY
AVAFPERVSH LILHGGYARG RLVRSRTEQA RDEAQTLAKL AEIGWGQHNP AFRQFFTTQF
IPGGTPQQHH WFNELERIST TPHNAARIMR VFNHIDVVDL LPHVQCPTLV LHAVRDARVP
FEESRLLASL IPNARFVPLE SDNHLPLECE SAWQRWRDEV RAFLPPARHI DPVFSALTRR
EREIVELIAG GRDNAQIAAR LGLSEKTVRN HITNIFAKLE VESRAQAIVL ARKAGFDAPA
A
|
|---|
| |