Gene Bphy_4292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_4292 
Symbol 
ID6245816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010623 
Strand
Start bp1303490 
End bp1305271 
Gene Length1782 bp 
Protein Length593 aa 
Translation table11 
GC content63% 
IMG OID642596048 
Productpolypeptide-transport-associated domain-containing protein 
Protein accessionYP_001860455 
Protein GI186473113 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.185481 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTAA GCAAGAGGCT GGCGGCGCTG CCGCTCACAG CCCTGGTCAC ACTTGCGTCC 
GCGCAACGCG CCCCATCCCC GGCAGACGAA GCGGCAGCAG CACGGGCGAA TGCGGAACAG
AACCAGCAGT TAAAACAGCA ACGCGACGCG CAGCAGCGGG AGCAGGCCGT CAATGCGCCA
GCCGTGCGCT CAACCGTGCC GAACGCCGGA GTCTATCCCG ACCTTCCACA CGAATCACCG
TGCTTTCGCA TCGACACGTT CACGCTTGAC GTGCCTGCGA CACTGCCCGA TGTCGCGCGC
AAGAACGGCG CATCCAACCT GCCGCTCGAT CCTTTCTGGT TCGCGCGCGA ATGGCTCGAC
CACTACCGGC GCGAGTGCAT CGGCAAGGCC GGACTTGACG TGCTCACGAA GGGCCTGCAA
CAGGTGATCC TTTCACGCGG CTACGTGACC ACGCGCGTCC TGCTGCCCGA ACAGGACGTA
TCGACAGGCA TTCTGAAAGT TGCGCTCGTG CCTGGTACCG TGCGGCATCT GCGCTTTGCT
GACCCCGACA CGCGCGGGAC ATGGAAGTCC GCATTCCCTG CACGCGACGG CGACCTGCTG
AACCTGCGAG ACCTTGAGCA GGGGCTGGAG CAGATGAAGC GCGTCGCGTC CCAGGACGTG
GACATGAAGA TCGAGCCCAC CGAAGCGCCA GGCGAGAGTG ACGTGGTGCT GAACGTGAAG
CGCGCGAAAC CCTGGAGCTT CGTCGCATCG GTGGACAACT CGGGTACGAA GGCGACGGGC
AAATGGCAGG GCAACGTGAG CCTCGGCCTC GACAACCCGC TCGGGCTGAA CGACACATTG
ACGGCCGGCG CGAATCAGGA CCTGTCATTC GGCAACAAGA CGCTCGGCTC ACACGGCTTC
AACGGCTCGT ACTCCGTGCC GTGGGGCTAC TGGACGGCGA CGCTGTCGGG CAACACGAAC
ACCTACTACC AGAACATTGC GGGCGTGAAC CAGACTTTCG TATCGAGCGG CAACGCGCAG
ACGGCCGCGT TCCGTCTCGC GCGCGTGCTC TCGCGTAGCC AGAACGACGT GTTCAGCATG
GAGCTGCAAC TGTCGAAGCG CTTCGGCGAG AGCTTTATCG AAGGCACGTC GATCCCGATC
CAGGACCGCA ACAACACGTT CGTCGAGGCG GGGCTGACCG ACCGCCACTA CTTCGGCGCA
GCGCAGTTCG ACGGAACACT GGCATACCGG CAAGGCATTC ACGGCCTGGG CGCAACGGGC
GACCCCGACC CGAGCCTGTA CGCATCGACA GACGACGGCA AGCCACTGCC CACCTACCTG
TACAGGATGC TCGTGCTCGA CGCTAACCTG TCGGTGCCGT TCGCCATTGC GACGCAAAAC
TTCCGCTACC TGTCGACCGT TCACGGCCAG TTCACGAACG ACCGGCTGTT CTTCATCGAC
GATCTGACCA TCGGCAGCCG CTACACGGTG CGGGGCTTCG ACGGCGAAAC GATGCTCGCG
GCAGAGAAAG GTTTCTACTG GCGCAATGAA CTGCAATGGC CCATCTTTCA GACGGGTCAG
ACGTTATACG CAGGCATCGA CTACGGGCGC GTGTTCGGGC CGAACACGGC GATTCTGGCG
GGCACCCAAC TCGCGGGCGC GGTGATTGGC ATCCGTGGCG GCATTCCGGC GAAGTACGCG
GGGTTCTCGT ATGACCTGTT CGCTGGAACA CCCATCTACA AACCCGCAGG TTTTCCGACC
GCGCGCGTCA CGGCCGGCGT CCAGGCCACA ATGCAGTTCT GA
 
Protein sequence
MKLSKRLAAL PLTALVTLAS AQRAPSPADE AAAARANAEQ NQQLKQQRDA QQREQAVNAP 
AVRSTVPNAG VYPDLPHESP CFRIDTFTLD VPATLPDVAR KNGASNLPLD PFWFAREWLD
HYRRECIGKA GLDVLTKGLQ QVILSRGYVT TRVLLPEQDV STGILKVALV PGTVRHLRFA
DPDTRGTWKS AFPARDGDLL NLRDLEQGLE QMKRVASQDV DMKIEPTEAP GESDVVLNVK
RAKPWSFVAS VDNSGTKATG KWQGNVSLGL DNPLGLNDTL TAGANQDLSF GNKTLGSHGF
NGSYSVPWGY WTATLSGNTN TYYQNIAGVN QTFVSSGNAQ TAAFRLARVL SRSQNDVFSM
ELQLSKRFGE SFIEGTSIPI QDRNNTFVEA GLTDRHYFGA AQFDGTLAYR QGIHGLGATG
DPDPSLYAST DDGKPLPTYL YRMLVLDANL SVPFAIATQN FRYLSTVHGQ FTNDRLFFID
DLTIGSRYTV RGFDGETMLA AEKGFYWRNE LQWPIFQTGQ TLYAGIDYGR VFGPNTAILA
GTQLAGAVIG IRGGIPAKYA GFSYDLFAGT PIYKPAGFPT ARVTAGVQAT MQF