| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4238 |
|---|
| Symbol | |
|---|
| ID | 6245765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | + |
|---|
| Start bp | 1229421 |
|---|
| End bp | 1230227 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642595997 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001860404 |
|---|
| Protein GI | 186473062 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCATA TCGATTTGAC AGGACAGGTT GCAGTGGTGA CGGGCGGTTC GTCCGGCATC
GGCCTCGCGA CCGCCGAACT CTTCCTGCGC GCACGCGCAT CGGTGGCGAT CTGCGGACGC
GACACCGATC GTCTCGCAAG CGCCGAAGCG TCGCTGCGCA AGCAGTTTCC CCGCGCGCAG
CTGCTCGCCG TGCGTTGCGA CGTGCTCGAC CCAGATGCTG TCGCAGCTTT CGCGAACGAC
GTGCAGCAAC GTTTCGGCCG CACCGACATG CTCGTGAACA ACGCAGGCCA AGGCCGCGTG
TCCACCTTCG CGGATACGAC CGACGAAGCC TGGCGGGAAG AACTCGATCT GAAGTACTTC
AGCGTGATCC GTCCGACGCG CGCATTTCTG CCGATGCTCA CGCAAGCCGC GCAGCATGGG
AACGGTTCGA TCGTCTGCGT GAATTCGCTG CTCGCATTGC AGCCCGAGCC GCACATGGTC
GCGACCTCGT CGGCGCGCGC CGGTGTGCAG AACCTGATCA AGTCGCTGGC CATCGAACTC
GCGCCGCAAC GCATTCGCGT GAACTCGATC CTGATCGGCA TTGTCGAGTC GGGTCAGTGG
CGCCGCCGCT ATCAGACGCA GGCACAGCCC GGTCAAAGCT GGGAAGACTG GACGGGCGAA
CTCGCGCGCA TGAAGAACAT CCCGCTCGGC CGCTTCGGCC GCCCCGAAGA AGCCGCACAA
GCGCTCTTTT ATCTCGCTAC ACCCCTGTCG TCGTACACGA CGGGAAGCCA TATCGATGTT
TCCGGAGGCG TTGCACGTCA TGTCTAA
|
|---|
| Protein sequence | MIHIDLTGQV AVVTGGSSGI GLATAELFLR ARASVAICGR DTDRLASAEA SLRKQFPRAQ
LLAVRCDVLD PDAVAAFAND VQQRFGRTDM LVNNAGQGRV STFADTTDEA WREELDLKYF
SVIRPTRAFL PMLTQAAQHG NGSIVCVNSL LALQPEPHMV ATSSARAGVQ NLIKSLAIEL
APQRIRVNSI LIGIVESGQW RRRYQTQAQP GQSWEDWTGE LARMKNIPLG RFGRPEEAAQ
ALFYLATPLS SYTTGSHIDV SGGVARHV
|
|---|
| |