Gene Bphy_3948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_3948 
Symbol 
ID6245478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010623 
Strand
Start bp920160 
End bp922058 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content65% 
IMG OID642595710 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_001860117 
Protein GI186472775 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACGACT TGCTGAAAAC CATTGACGAC CCCGCGGACC TGCGCCGCCT CGATCGCCGC 
CAGTTGCAAC CGCTTGCGGA CGAGTTGCGT GCCTTCGTGC TCGACAGCGT CTCGCAGACG
GGCGGCCACC TGTCGTCCAA CCTCGGCACG GTCGAACTGA CGATCGCGCT GCACTATGTG
TTTGACACGC CGCGCGACCG CATCGTCTGG GATGTGGGTC ATCAGACCTA TCCTCACAAG
ATTCTGACGG GCCGCCGGGA CCAGATGTCG ACGCTGCGTC AGCTCGGCGG CATCTCGGGC
TTTCCGAAAC GCGACGAGTC GCCGTACGAC ACGTTTGGCA CCGCCCACTC GAGCACGTCG
ATTTCGGCGG CGCTCGGCAT GGCGATCGGC AGCAAGCTGC GCGGCGACGA CCGCTTCGCG
ATCGCCGTGA TCGGCGACGG CGCGATGACG GCGGGCATGG CCTTCGAGGC GATGAACAAC
GCCGGCGTCG AAGACGACGT GCCGCTGCTG GTCATCCTGA ACGACAACGA CATGTCGATT
TCGCCGCCTG TGGGCGCGCT GAATCGCCAT CTCGCGCGTC TGATGTCGGG CCGCTTCTAT
GCCGCCGCGC GCGCCGGCGT CGAACGCGTG CTGCGCCACG CGCCGCCCGT GCTCGACCTC
GCCCGCAAGC TCGAAGAGCA CGCGAAGGGC ATGATCGTGC CGGCCACGCT GTTCGAAGAG
TTCGGCTTCA ACTACATCGG GCCGATCGAC GGTCACGATC TCGATTCGCT GATCCCCACG
CTGCAGAACA TCAAGGAACT GCGCGGTCCG CAGTTCCTGC ACGTCGTGAC GAAGAAGGGC
CAGGGGTACA AGCTGGCCGA GGCCGACCCG GTGCTGTACC ACGGCCCGGG CAAGTTCAAC
CCGGCCGAAG GCATCAAGCC GTCGACGACG CCCGCCAAGA AGACCTACAC GCAGGTGTTC
GGCGAATGGC TGTGCGACGC GGCCGAGCTC GACTCGCGCG TGGTCGGCAT CACGCCGGCG
ATGCGCGAAG GCTCGGGCAT GGTTGAGTTC GAAAAGCGCT TCCCGGATCG CTACTACGAC
GTCGGCATCG CGGAGCAGCA CGCTGTGACG TTCGCGGGCG GGCTTGCGAC GGAAGGCATG
AAGCCTGTCG TCGCGATCTA TTCGACGTTC CTGCAACGCG GGTATGACCA GCTGATTCAC
GACGTCGCGC TGCAGAACCT GCCCGTTGTG TTCGCAATCG ATCGTGCCGG CCTTGTCGGC
GCGGACGGTG CGACGCATGC AGGCGCATAC GATCTCGCGT TCATGCGCTG CATTCCGAAC
ATGACAATCA TGGCCGCGTC GGACGAAAAC GAATGCCGCC AGATGCTGTA CACCGCGCTG
CAGCAGCCGA ATCCGACGGC AGTGCGCTAT CCGCGCGGCG CGGGCACGGG CGTGGCGACC
GTCAAGCAGA TGGCCGCACT TCCGCTCGGC AAGGGCGAAG TTCGCCGCCA GTCGACGCAG
CCGGCGGGCA AGCGCATCGC GATTCTCGCG TTCGGCACGA TGGTCGCGCC GTCGCTCGCC
GCGGCGGAGC AACTGGATGC AACCGTCGCG AACATGCGCT TCGTGAAGCC GATCGATGCC
GCTCTGGTAC GCGAACTGGC CGAAACACAC GACGCGGTCG TCACCGTCGA GGAGGGCTGC
GTGATGGGCG GCGCCGGTTC GGCGTGCGTG GAAGCCATGA TGGAGAGTGG GGTTATCCGA
CCCGTACTAC AATTGGGCCT TCCCGATCGC TTCATCGATC ACGGAGATCC TGCAAAGCTG
CTGGCGTCAT GCGGTCTCGA CGCCGCGGGC ATCGCGAAGT CAATTCGTGA GCGATTTGTA
GAGCACGCAA GCGGCAAGTC GGTGAAACGC GTCGCTTAA
 
Protein sequence
MYDLLKTIDD PADLRRLDRR QLQPLADELR AFVLDSVSQT GGHLSSNLGT VELTIALHYV 
FDTPRDRIVW DVGHQTYPHK ILTGRRDQMS TLRQLGGISG FPKRDESPYD TFGTAHSSTS
ISAALGMAIG SKLRGDDRFA IAVIGDGAMT AGMAFEAMNN AGVEDDVPLL VILNDNDMSI
SPPVGALNRH LARLMSGRFY AAARAGVERV LRHAPPVLDL ARKLEEHAKG MIVPATLFEE
FGFNYIGPID GHDLDSLIPT LQNIKELRGP QFLHVVTKKG QGYKLAEADP VLYHGPGKFN
PAEGIKPSTT PAKKTYTQVF GEWLCDAAEL DSRVVGITPA MREGSGMVEF EKRFPDRYYD
VGIAEQHAVT FAGGLATEGM KPVVAIYSTF LQRGYDQLIH DVALQNLPVV FAIDRAGLVG
ADGATHAGAY DLAFMRCIPN MTIMAASDEN ECRQMLYTAL QQPNPTAVRY PRGAGTGVAT
VKQMAALPLG KGEVRRQSTQ PAGKRIAILA FGTMVAPSLA AAEQLDATVA NMRFVKPIDA
ALVRELAETH DAVVTVEEGC VMGGAGSACV EAMMESGVIR PVLQLGLPDR FIDHGDPAKL
LASCGLDAAG IAKSIRERFV EHASGKSVKR VA