Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_3948 |
Symbol | |
ID | 6245478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010623 |
Strand | - |
Start bp | 920160 |
End bp | 922058 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642595710 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001860117 |
Protein GI | 186472775 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACGACT TGCTGAAAAC CATTGACGAC CCCGCGGACC TGCGCCGCCT CGATCGCCGC CAGTTGCAAC CGCTTGCGGA CGAGTTGCGT GCCTTCGTGC TCGACAGCGT CTCGCAGACG GGCGGCCACC TGTCGTCCAA CCTCGGCACG GTCGAACTGA CGATCGCGCT GCACTATGTG TTTGACACGC CGCGCGACCG CATCGTCTGG GATGTGGGTC ATCAGACCTA TCCTCACAAG ATTCTGACGG GCCGCCGGGA CCAGATGTCG ACGCTGCGTC AGCTCGGCGG CATCTCGGGC TTTCCGAAAC GCGACGAGTC GCCGTACGAC ACGTTTGGCA CCGCCCACTC GAGCACGTCG ATTTCGGCGG CGCTCGGCAT GGCGATCGGC AGCAAGCTGC GCGGCGACGA CCGCTTCGCG ATCGCCGTGA TCGGCGACGG CGCGATGACG GCGGGCATGG CCTTCGAGGC GATGAACAAC GCCGGCGTCG AAGACGACGT GCCGCTGCTG GTCATCCTGA ACGACAACGA CATGTCGATT TCGCCGCCTG TGGGCGCGCT GAATCGCCAT CTCGCGCGTC TGATGTCGGG CCGCTTCTAT GCCGCCGCGC GCGCCGGCGT CGAACGCGTG CTGCGCCACG CGCCGCCCGT GCTCGACCTC GCCCGCAAGC TCGAAGAGCA CGCGAAGGGC ATGATCGTGC CGGCCACGCT GTTCGAAGAG TTCGGCTTCA ACTACATCGG GCCGATCGAC GGTCACGATC TCGATTCGCT GATCCCCACG CTGCAGAACA TCAAGGAACT GCGCGGTCCG CAGTTCCTGC ACGTCGTGAC GAAGAAGGGC CAGGGGTACA AGCTGGCCGA GGCCGACCCG GTGCTGTACC ACGGCCCGGG CAAGTTCAAC CCGGCCGAAG GCATCAAGCC GTCGACGACG CCCGCCAAGA AGACCTACAC GCAGGTGTTC GGCGAATGGC TGTGCGACGC GGCCGAGCTC GACTCGCGCG TGGTCGGCAT CACGCCGGCG ATGCGCGAAG GCTCGGGCAT GGTTGAGTTC GAAAAGCGCT TCCCGGATCG CTACTACGAC GTCGGCATCG CGGAGCAGCA CGCTGTGACG TTCGCGGGCG GGCTTGCGAC GGAAGGCATG AAGCCTGTCG TCGCGATCTA TTCGACGTTC CTGCAACGCG GGTATGACCA GCTGATTCAC GACGTCGCGC TGCAGAACCT GCCCGTTGTG TTCGCAATCG ATCGTGCCGG CCTTGTCGGC GCGGACGGTG CGACGCATGC AGGCGCATAC GATCTCGCGT TCATGCGCTG CATTCCGAAC ATGACAATCA TGGCCGCGTC GGACGAAAAC GAATGCCGCC AGATGCTGTA CACCGCGCTG CAGCAGCCGA ATCCGACGGC AGTGCGCTAT CCGCGCGGCG CGGGCACGGG CGTGGCGACC GTCAAGCAGA TGGCCGCACT TCCGCTCGGC AAGGGCGAAG TTCGCCGCCA GTCGACGCAG CCGGCGGGCA AGCGCATCGC GATTCTCGCG TTCGGCACGA TGGTCGCGCC GTCGCTCGCC GCGGCGGAGC AACTGGATGC AACCGTCGCG AACATGCGCT TCGTGAAGCC GATCGATGCC GCTCTGGTAC GCGAACTGGC CGAAACACAC GACGCGGTCG TCACCGTCGA GGAGGGCTGC GTGATGGGCG GCGCCGGTTC GGCGTGCGTG GAAGCCATGA TGGAGAGTGG GGTTATCCGA CCCGTACTAC AATTGGGCCT TCCCGATCGC TTCATCGATC ACGGAGATCC TGCAAAGCTG CTGGCGTCAT GCGGTCTCGA CGCCGCGGGC ATCGCGAAGT CAATTCGTGA GCGATTTGTA GAGCACGCAA GCGGCAAGTC GGTGAAACGC GTCGCTTAA
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Protein sequence | MYDLLKTIDD PADLRRLDRR QLQPLADELR AFVLDSVSQT GGHLSSNLGT VELTIALHYV FDTPRDRIVW DVGHQTYPHK ILTGRRDQMS TLRQLGGISG FPKRDESPYD TFGTAHSSTS ISAALGMAIG SKLRGDDRFA IAVIGDGAMT AGMAFEAMNN AGVEDDVPLL VILNDNDMSI SPPVGALNRH LARLMSGRFY AAARAGVERV LRHAPPVLDL ARKLEEHAKG MIVPATLFEE FGFNYIGPID GHDLDSLIPT LQNIKELRGP QFLHVVTKKG QGYKLAEADP VLYHGPGKFN PAEGIKPSTT PAKKTYTQVF GEWLCDAAEL DSRVVGITPA MREGSGMVEF EKRFPDRYYD VGIAEQHAVT FAGGLATEGM KPVVAIYSTF LQRGYDQLIH DVALQNLPVV FAIDRAGLVG ADGATHAGAY DLAFMRCIPN MTIMAASDEN ECRQMLYTAL QQPNPTAVRY PRGAGTGVAT VKQMAALPLG KGEVRRQSTQ PAGKRIAILA FGTMVAPSLA AAEQLDATVA NMRFVKPIDA ALVRELAETH DAVVTVEEGC VMGGAGSACV EAMMESGVIR PVLQLGLPDR FIDHGDPAKL LASCGLDAAG IAKSIRERFV EHASGKSVKR VA
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