Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_3941 |
Symbol | |
ID | 6247072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010623 |
Strand | - |
Start bp | 911227 |
End bp | 913284 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642595703 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001860110 |
Protein GI | 186472768 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAACT CCATGACGAA AAAGCTGAAC GAAGTATCCG TCGATGACGA CGCATCCCAG AGCGAAGAAA CTGCAGCGAC CCCCGCTCCG GGCAAAGGCG AGAAGGCCAA GGCACGCGAC CGCCGCGCTA AAGAAAAGGC GCTGCTGAAG GACGCGTTCG CGTCTTCGCA GCCTGGCACC GTCGAGGAGC TTGAAGAGCG CCGCTCGAAG CTGCGGGCGC TGATCAAGCT CGGCAAGGAG CGCGGCTTCC TGACCTACGG CGAGATCAAC GACCACCTCC CGGACAACTT CACGGAAACC GAGGCGATCG AAGGGATCAT CAGCACGTTC AACGACATGG GTGTTGCCGT CTACGAGCAG GCGCCCGATG CCGAAACGCT GCTGTTGAAC GACAACGCGC CGAACGCCTC GTCGGACGAC GAAGTGGAAG AGGAAGCCGA AGTCGCGCTG TCCACTGTCG ATTCCGAATT TGGTCGCACG ACCGACCCGG TGCGTATGTA CATGCGCGAA ATGGGCACGG TCGAACTGCT CACGCGTGAA GGCGAAATCG AAATCGCGAA GCGTATCGAA GACGGGCTGA AGCACATGGT GATGGCCATC TCCGCGTGCC CGACGACGAT CGCCGACATC CTCGCGATGG CGGAGCGCGT TGCGAACGAA GAGATTCGCA TCGACGAACT CGTCGACGGC CTGATCGACG TGAACGCAGA AGATACCGAT GGCTTCTCCG AACAGGAAGC CGAAGCGATC GAAAGCGAAG ACGAAGAAGA GGAAGAGGCT GACGAGGAAG AAGAGGAAGA CGACGACGGC GCCGCGCAAG CGACGGCCAA CGCCGCTCAG CTCGAAGAAC TCAAACGCCT GTCGCTCGAA AAATTCGCGC TGATCAGCGA ATGGTTCGAC AAGATGCGCC GCGCGTTCGA AAAGGAAGGC TACAAGTCGA AGTCCTACCT GAAGGCGCAG GAAACCATCC AGGAAGAGTT GATGATGATC CGCTTCACCG CGCGTACGGT GGAGCGTCTG TGCGACACGC TGCGCGCGCA GGTGGACGAA GTGCGTCAGG TCGAGCGTCA GATCCTGCAT ACGGTCGTCG ACAAGTGCGG CATGCCGCGT GCCGAGTTCA TCGCGCGTTT TCCGGGTAAC GAGACGGACC TCGAGTGGGC CGACAAGATC GTCAGCGAGA ACCATGCGTA CAGCGCGATC CTGTCGCGTA ACGTGCCCGC CATCCGCGAA CAGCAGCAGC GTCTGCTGGA TTTGCAAGCG CGCGTCGTGC TGCCGCTGAA GGATCTGAAG GAAACCAACC GTCAGATGGC GGCGGGCGAA CTGAAAGCGC GTCAGGCTAA GCGCGAAATG ACGGAGGCGA ACCTGCGTCT CGTGATCTCG ATCGCGAAGA AGTACACGAA CCGTGGCCTG CAGTTCCTCG ATCTGATTCA GGAAGGCAAC ATCGGCCTGA TGAAGGCCGT GGACAAGTTC GAATATCGCC GTGGCTACAA GTTCTCGACG TACGCGACGT GGTGGATCCG CCAGGCCATC ACGCGCTCGA TCGCCGATCA GGCGCGCACC ATTCGCATCC CGGTTCACAT GATCGAAACG ATCAACAAAA TGAACCGCAT CTCGCGTCAG ATTCTGCAGG AAACCGGCCT GGAGCCGGAT CCGGCAACGC TGGCCGAGAA GATGGAAATG CCGGAAGACA AGATCCGCAA GATCATGAAG ATCGCAAAGG AGCCGATTTC GATGGAAACG CCCATCGGTG ACGACGACGA TTCGCATCTC GGCGACTTCA TCGAGGACAC GAATACGGTC GCGCCGTCGG ACGCCGCGCT GCATGCGAGC ATGCGCGATG TCGTGAAGGA CGTGCTCGAT TCGCTGACGC CACGCGAAGC GAAGGTGCTG CGCATGCGTT TTGGTATCGA AATGAGCACG GATCACACGC TGGAAGAAGT CGGCAAGCAG TTCGACGTGA CGCGTGAGCG TATCCGTCAG ATCGAGGCGA AGGCGCTGCG CAAGCTGCGT CACCCGAGCC GTTCGGACAA GCTGAAGTCG TTCCTCGAAG GGAACTAG
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Protein sequence | MANSMTKKLN EVSVDDDASQ SEETAATPAP GKGEKAKARD RRAKEKALLK DAFASSQPGT VEELEERRSK LRALIKLGKE RGFLTYGEIN DHLPDNFTET EAIEGIISTF NDMGVAVYEQ APDAETLLLN DNAPNASSDD EVEEEAEVAL STVDSEFGRT TDPVRMYMRE MGTVELLTRE GEIEIAKRIE DGLKHMVMAI SACPTTIADI LAMAERVANE EIRIDELVDG LIDVNAEDTD GFSEQEAEAI ESEDEEEEEA DEEEEEDDDG AAQATANAAQ LEELKRLSLE KFALISEWFD KMRRAFEKEG YKSKSYLKAQ ETIQEELMMI RFTARTVERL CDTLRAQVDE VRQVERQILH TVVDKCGMPR AEFIARFPGN ETDLEWADKI VSENHAYSAI LSRNVPAIRE QQQRLLDLQA RVVLPLKDLK ETNRQMAAGE LKARQAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ ILQETGLEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDTNTV APSDAALHAS MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR HPSRSDKLKS FLEGN
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