Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_3196 |
Symbol | |
ID | 6244879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010623 |
Strand | - |
Start bp | 105992 |
End bp | 107077 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642594990 |
Product | outer membrane protein (porin) |
Protein accession | YP_001859402 |
Protein GI | 186472060 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00143868 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACGA TAAGGAGTCT AAGTTTGATA TCGGTTTCTG CTTTGGTTGC CGGCAGTGCT TGCGCTCAAA GCAACGTTAC GTTATACGGA ATCGTTGATA CAGGTGTGCA ATATTACAAC AACGCCACAG CTTCAGGCGG ATCAGTCGTC GGAATGCCGA GCCTCTCAGG GAAACTGCCG TCGCGTTTTG GTCTGCGGGG CGTAGAAGAT CTAGGCGGTG GGTATAAGGC GTTCTTCGTC CTCGAAAATG GTTTTGCAGT GAACAACGGT GCGCTAGGGT ACGGTGGAAG AATATTCGGG CGTGCCGCAA ACGTTGGAAT TGATAGCAGG TTCGGAACCT TGACGTTGGG CAGACAGATG AACATGACGT TATACGCGCT TACCGACGCC GACGTCATAG GACCGTCTAA CCACTCCTTG GCGGTTTTTG ACACATATCT GCCAAATGCT CGCAGCGACA ACGCAGTGGG GTATATGGGG AAATGGCACG GCTTCACTAT CGGTGCGACT TATAGTTTTG GTCGAGATGC AGCCGGGCCT GCTGGCCCGT CTGCGACCAA CTGTGCGGGC CAGGTTCCTG GTGACTTCGT CGCGTGTCGG CAGTACACGG TCATGCTCGC CTATGCCTCG GAGACACTCG GTGTCACTGC GTCATATGAC GTCATGCGCG GAGGTACGGG AGCGTCAGCG CCGCTATCAA GCAGCGCCAA TACGGACACA CGGACAATCG TTGACGGCTA CGCAAAATAC GGAAACCTGA AGTTGGGAGC AGGGTGGATC AGGCGAAATA CGTCGAGCAC GACTCATAGT CAATCGGACA TCTTCTTCGC GGGTGGTACC TATCTGTTGA CACCCGCATT CGCAGTTGAC GCGCAGGCGG TTAGGTACAT ATTGCGGACG CGTTCGGACG CGACACTGTT TGTTGGGCGC GTAAGCTACT TTCTTTCAAA ACGAACGTCA ATCTATTCAT CTGCTGGTTA TATGATCAAC AGTCCCACTT CGGCAGTCCC GGTATCGGCG GGCGGCACCG TCGGAATAGG TAAGAATCAG GTGGGTTTCA TGGTTGGTAT GCAGCAGCGT TTCTAA
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Protein sequence | MKTIRSLSLI SVSALVAGSA CAQSNVTLYG IVDTGVQYYN NATASGGSVV GMPSLSGKLP SRFGLRGVED LGGGYKAFFV LENGFAVNNG ALGYGGRIFG RAANVGIDSR FGTLTLGRQM NMTLYALTDA DVIGPSNHSL AVFDTYLPNA RSDNAVGYMG KWHGFTIGAT YSFGRDAAGP AGPSATNCAG QVPGDFVACR QYTVMLAYAS ETLGVTASYD VMRGGTGASA PLSSSANTDT RTIVDGYAKY GNLKLGAGWI RRNTSSTTHS QSDIFFAGGT YLLTPAFAVD AQAVRYILRT RSDATLFVGR VSYFLSKRTS IYSSAGYMIN SPTSAVPVSA GGTVGIGKNQ VGFMVGMQQR F
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