| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3023 |
|---|
| Symbol | hemE |
|---|
| ID | 6244504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 3395980 |
|---|
| End bp | 3397116 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642594827 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_001859239 |
|---|
| Protein GI | 186477769 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTTT GCCTTCCTTC AGTCGCGAGC AACGTGGCCC ACAACCTCCT CAACGACACC
TTTCTACGCG CGTTGATGCG CGAGCCGACC GAGTACACGC CGATCTGGCT GATGCGCCAG
GCGGGACGTT ATCTGCCGGA ATACAACGCG ACGCGTAGCC GCGCGGGGAG CTTCCTCGGG
CTGGCGAAGA ACCCCGACTA CGCGACGGAA GTTACGCTGC AGCCGCTCGA GCGCTATCCG
CTCGACGCCG CCATTCTTTT TTCCGACATT CTGACCGTCC CCGACGCAAT GGGCCTGGGT
CTGGACTTCC AGGTCGGCGA AGGGCCGAAG TTTGCGCACC CGGTACGCAC TGAAGAAGAT
GTCGCGCGCC TCACCGTGCC GGACATCGAT GCCACTCTGC GCTATGTGAC GGATGCCGTG
CGCCAGATCC GCACCGCGCT GACCGACGCG CAAGGCCGTC AGCGCGTGCC GTTGATCGGC
TTCTCGGGAA GTCCGTGGAC GCTCGCCTGC TACATGGTCG AAGGCGGCGG CTCCGATGAT
TTCCGCACCG TAAAGTCGAT GCTCTATGGC CGCCCTGACC TGATGCATCG CATCCTGGAG
GTCAACGCGA AGGCCGTAGC TGCCTATCTG AACGCGCAGA TCGAAGCAGG CGCGCAAGCC
GTGATGATTT TCGACACGTG GGGCGGGGCG CTCGCTGATG GCATCTATCA ACGCTTTTCG
CTGCACTACA TCCAGCAGGT CGTGCGCCAG TTGAAGCGCG AACACGACGG CAATCGCGTG
CCAGTCATTA CCTTCACGAA GGGCGGCGGC CTGTGGCTCG AAGAAATCGC GGCGACGGGC
GTCGATGCCG TCGGTCTCGA CTGGACCGTG AATCTGGGCA AGGCGCGCGA GCGCGTCGGC
GGACAAGTCG CGCTTCAGGG CAATATCGAT CCGTCCGTGC TGTTCGCGCC ACCGTCTACG
ATTCGCATCG AAGCTCGCGC GGTGCTCGAC AGCTTCGGCA ACCATCCGGG CCACGTTTTC
AATCTCGGAC ATGGCATCTC ACAGTTCACC CCGCCGGAAC ATGTGGCGGA ACTGGTCGAC
GAAGTGCATC GGCATAGCCG TGCGATTCGC GCGACAGGCG GCAGGGGCGC CGCGTAA
|
|---|
| Protein sequence | MRFCLPSVAS NVAHNLLNDT FLRALMREPT EYTPIWLMRQ AGRYLPEYNA TRSRAGSFLG
LAKNPDYATE VTLQPLERYP LDAAILFSDI LTVPDAMGLG LDFQVGEGPK FAHPVRTEED
VARLTVPDID ATLRYVTDAV RQIRTALTDA QGRQRVPLIG FSGSPWTLAC YMVEGGGSDD
FRTVKSMLYG RPDLMHRILE VNAKAVAAYL NAQIEAGAQA VMIFDTWGGA LADGIYQRFS
LHYIQQVVRQ LKREHDGNRV PVITFTKGGG LWLEEIAATG VDAVGLDWTV NLGKARERVG
GQVALQGNID PSVLFAPPST IRIEARAVLD SFGNHPGHVF NLGHGISQFT PPEHVAELVD
EVHRHSRAIR ATGGRGAA
|
|---|
| |