| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3018 |
|---|
| Symbol | putA |
|---|
| ID | 6244499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 3386957 |
|---|
| End bp | 3390919 |
|---|
| Gene Length | 3963 bp |
|---|
| Protein Length | 1320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642594822 |
|---|
| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_001859234 |
|---|
| Protein GI | 186477764 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGCA CCACCCTTGG CGTAAAAGTC GACGACCTGC TGCGTACCCG GCTGAAAGAT
GCCGCGACGC GCCTCGAGCG CACTCCCCAC TGGCTGATCA AGCAGGCGAT CTTCGCTTAC
CTCGAGAAGA TCGAGCACGG CCAGCTTCCC GCCGAGCTGT CCGGGCATCA CGGCGCAACC
GAACTGGCCG ATGGTGCCGC CGATCCGGAC GAAAGCGACG GACTGCATCC GTTCCTCGAA
TTCGCGCAGA GCGTGCAGCC GCAGTCGGTG CTGCGTGCGG CGATCACGGC TGCGTATCGA
CGGCCGGAGC CGGAATGCGT GCCGTTCCTG ATAGGCCAGG CGCGTCTGCC TGCGAATATC
GCGAACGACG TGCAGGCCAT GGCGAGCAAG CTCGTCGAAG CACTGCGCTC GAAGAGCACG
GGCGGCGGCG TCGAAGGGCT GATCCACGAG TTCTCGCTGT CGAGCCAGGA AGGTGTGGCG
CTGATGTGTC TCGCGGAAGC GCTGCTGCGC ATTCCCGACC GCGCAACGCG CGACGCGCTG
ATTCGCGACA AGATCAGCAA GGGCGACTGG CGTTCGCACG TCGGTCATGC ACCGTCGCTG
TTCGTGAACG CGGCGACGTG GGGCCTGATG ATCACCGGCA AGCTGGTGAC GACGAATAGC
GAAACGGGCC TGTCGTCGGC GCTCACGCGC ATGATCGGCA AGGGCGGCGA GCCGCTGATC
CGCAAGGGCG TCGACATGGC GATGCGCCTG ATGGGCGAGC AGTTCGTGAC GGGTGAAACC
ATCTCCGAAG CGCTCGCCAA CAGCCGCAAG TTCGAGGCAC GCGGCTTCCG CTACTCCTAC
GACATGCTCG GCGAAGCCGC GACCACGGAA GCCGACGCGC AGCGCTACTA CGCATCGTAC
GAGCAGGCGA TCCACGCGAT CGGCAAGGCG GCGGGCGGCC GCGGCATCTA CGAAGGCCCG
GGCATTTCGA TCAAGCTGTC GGCGCTGCAT CCGCGTTACT CGCGTTCGCA GCAGGAACGC
ACGATGAGCG AGCTGCTGCC GCGCGTGCGC GCGCTTGCGA TTCTCGCGCG CCGCTACGAC
ATCGGCCTGA ACATCGACGC TGAAGAAGCG GACCGTCTGG AGATCTCGCT CGATCTGCTC
GAAGCGCTGT GCTTCGACCC GGAGCTGCAA GGCTGGAATG GCATCGGCTT CGTCGTGCAG
GCATATCAGA AGCGCTGTCC GTTCGTGATC GACTACATCG TCGACCTCGC GCGTCGCAGC
CGCCACCGCA TCATGGTCCG TCTGGTGAAG GGCGCGTACT GGGATACGGA AATCAAGCGC
GCGCAGGTGG ATGGCCTCGA AGGTTATCCC GTGTACACGC GCAAGATCTA TACGGACGTG
TCGTACCTCG CGTGCGCGAA GAAGCTGCTC GGCGCACCGG ATGCCGTCTA TCCGCAGTTC
GCGACGCACA ATGCGCACAC GCTGTCCGCG ATCTATCACC TGGCGGGCCA GAACTACTAC
CCCGGCCAGT ACGAGTTCCA GTGCCTGCAC GGCATGGGTG AGCCGCTGTA CGAAGAAGTG
ACGGGCCGCG ACAAGCTGAA TCGTCCGTGC CGCGTATATG CGCCCGTCGG CACCCATGAA
ACGTTGCTCG CGTACCTTGT GCGCCGCCTG CTGGAAAACG GTGCGAACAC ATCATTCGTG
AACCGCATCG CTGATGAAAC CGTGCCCGTG CAGGATCTCG TCGCCGATCC CGTCGATGAA
GCTGCGAAGA TCGTGCCGCT CGGCGCGCCG CACGCGAAGA TTCCGCTGCC GCGCAATCTG
TACGGCGCGG AGCGCACCAA TTCGATGGGC CTCGATCTGT CGAACGAGCA TCGCCTCGCG
TCGCTGTCGT CGGCGCTGCT GGCTAGCGCG AATCATCCGT GGCGTGCCGC GCCGATGCTC
GAAGGCAACG AGATCGCCGT CGGTCGTGCA CGGGACGTGC GTAACCCGTC GGATCACCGC
GACCTCGTCG GCACGGTCGT CGAAGCGACG CCGGAACACG TGAGCGCCGC GCTCGCGCAT
GCCGTCGCCG CTGCGCCCAT CTGGCAGGCG ACGCCTGTTG AAGCGCGTGC CGATTGCCTC
GCGCGAGCCG CCGATCTGCT CGAAGCGCAG ATGCATACCC TGATGGGCCT CGTGGTGCGC
GAAGCGGGCA AGTCGCTGCC GAACGCCGTC GCCGAAATTC GCGAAGCGAT CGACTTCCTG
CGCTACTACT CGAGTCAGAT CCGCGACGAG TTCTCGAACG ACACGCATCG CCCCCTCGGT
CCCGTCGTGT GTATCAGTCC GTGGAACTTC CCGCTGGCGA TCTTCATGGG TCAGGTAGCC
GCGGCGCTCG CCGCAGGCAA CACGGTTTTG GCCAAGCCCG CCGAACAGAC GCCGCTGATC
GCCGCGCAAG CCGTGCGCAT TCTGCGCGAA GCGGGTGTGC CCGCGGGCGC AGTGCAACTG
CTGCCGGGCG ATGGCGAAAC GGTTGGCGCT GCGCTGGTCG CCGATGCACG CACGCGCGCC
GTGATGTTCA CCGGCTCGAC GGAAGTCGCG CGTCTCATCA ACAAGACGCT TTCGAATCGC
CTCGACCCTG ATGGCAAGCC GATTCCGCTG ATCGCCGAAA CGGGCGGCCA GAACGCGATG
ATCGTCGATT CGTCGGCGCT CGCCGAACAG GTTGTGGCCG ACGTGCTGCA ATCGTCGTTC
GATTCGGCCG GTCAACGTTG TTCCGCGCTG CGCGTTCTCT GTCTTCAGGA CGATGTCGCG
GACCGCACGC TCGAAATGCT GACGGGCGCG ATGAAGGAAC TGGCGGTGGG CAATCCCGAC
CGTCTGTCGA TCGACGTGGG TCCCGTGATC GACGCGGAAG CGAAGCGCGG TATCGACGCG
CATATCGCCT CGATGCGCGA GAAGGGCCGC AAGGTCACAC AGATGCCGAT GCCGGATGGC
TGTGCAGCCG GTACGTTCGT GCCGCCGACG CTGATCGAAC TCGACAACAT CGACGAACTG
AAGCGTGAAG TGTTCGGCCC CGTGCTGCAC GTGGTGCGTT ACCGCCGCAG CGCGCTGGAC
AAACTGCTCG AACAGATCCG CGCGACGGGG TACGGGCTGA CGCTCGGCAT TCATACGCGC
ATCGACGAAA CGATCGCGCA TGTGATCGGC CGCGCGCACG TGGGCAATAT CTACGTGAAC
CGCAACGTGA TCGGCGCGGT GGTCGGCGTG CAGCCGTTCG GCGGGGAAGG GCTGTCGGGC
ACGGGTCCGA AGGCGGGCGG CGCGCTGTAT CTGCAGCGTC TGCTGGCGAC GCGTCCGGCC
GGTTTGCCGA AGTCGCTTGC GCGGACCTTG ATGGTCGACG CGTCGCAAGG CGCGGCGAAT
GGTGGGCAAA GCGCTGCACA AAACGGCAAC GCGGCAAGCG ATAATCCTGC CGCTGCGCTG
ACGACGCTGC GCGACTGGTT GATCGCGGAA CGCGAGCCGG TGCTGGCCGC ACGTTGTGAC
GGCTACCTGT CGCACATCCC GGCGGGCGCG ACGGCTGTGC TGGCGGGCCC GACGGGCGAG
CGCAACACGT ACACGCTCGG CGCACGCGGC ACGGTGCTGT GTGTTGCATC GACAGCGAGC
GGCGCGCGCG TGCAGTTCGC GGCGGCGCTG GCGACGGGCA ACAAGGCGCT GTTCGAAGGC
GCGGCGGGCG AGCAACTGTA TGCCGCGCTG CCGCCGTCGC TGAAGCAGTA CGCGAGCGTG
AAGAAGAACG CCGAAGCATC GTTCGATGCC GCGCTCTTCG AAGGCGACAG CGACGAGTTG
CTGGCACTCG TGAAGGACAT CGCGAAGCGC GCGGGTCCCA TCGTGTCGGT GCAGGGCGTC
GCGGCACGCG CGCTGGAAAG CGGCGATGAG GATTACGCAC TCGAACGCCT GTTGACGGAG
CGTTCGGTGA GCGTGAATAC GGCAGCAGCA GGCGGTAATG CAAATTTGAT GACGATCGGC
TGA
|
|---|
| Protein sequence | MASTTLGVKV DDLLRTRLKD AATRLERTPH WLIKQAIFAY LEKIEHGQLP AELSGHHGAT
ELADGAADPD ESDGLHPFLE FAQSVQPQSV LRAAITAAYR RPEPECVPFL IGQARLPANI
ANDVQAMASK LVEALRSKST GGGVEGLIHE FSLSSQEGVA LMCLAEALLR IPDRATRDAL
IRDKISKGDW RSHVGHAPSL FVNAATWGLM ITGKLVTTNS ETGLSSALTR MIGKGGEPLI
RKGVDMAMRL MGEQFVTGET ISEALANSRK FEARGFRYSY DMLGEAATTE ADAQRYYASY
EQAIHAIGKA AGGRGIYEGP GISIKLSALH PRYSRSQQER TMSELLPRVR ALAILARRYD
IGLNIDAEEA DRLEISLDLL EALCFDPELQ GWNGIGFVVQ AYQKRCPFVI DYIVDLARRS
RHRIMVRLVK GAYWDTEIKR AQVDGLEGYP VYTRKIYTDV SYLACAKKLL GAPDAVYPQF
ATHNAHTLSA IYHLAGQNYY PGQYEFQCLH GMGEPLYEEV TGRDKLNRPC RVYAPVGTHE
TLLAYLVRRL LENGANTSFV NRIADETVPV QDLVADPVDE AAKIVPLGAP HAKIPLPRNL
YGAERTNSMG LDLSNEHRLA SLSSALLASA NHPWRAAPML EGNEIAVGRA RDVRNPSDHR
DLVGTVVEAT PEHVSAALAH AVAAAPIWQA TPVEARADCL ARAADLLEAQ MHTLMGLVVR
EAGKSLPNAV AEIREAIDFL RYYSSQIRDE FSNDTHRPLG PVVCISPWNF PLAIFMGQVA
AALAAGNTVL AKPAEQTPLI AAQAVRILRE AGVPAGAVQL LPGDGETVGA ALVADARTRA
VMFTGSTEVA RLINKTLSNR LDPDGKPIPL IAETGGQNAM IVDSSALAEQ VVADVLQSSF
DSAGQRCSAL RVLCLQDDVA DRTLEMLTGA MKELAVGNPD RLSIDVGPVI DAEAKRGIDA
HIASMREKGR KVTQMPMPDG CAAGTFVPPT LIELDNIDEL KREVFGPVLH VVRYRRSALD
KLLEQIRATG YGLTLGIHTR IDETIAHVIG RAHVGNIYVN RNVIGAVVGV QPFGGEGLSG
TGPKAGGALY LQRLLATRPA GLPKSLARTL MVDASQGAAN GGQSAAQNGN AASDNPAAAL
TTLRDWLIAE REPVLAARCD GYLSHIPAGA TAVLAGPTGE RNTYTLGARG TVLCVASTAS
GARVQFAAAL ATGNKALFEG AAGEQLYAAL PPSLKQYASV KKNAEASFDA ALFEGDSDEL
LALVKDIAKR AGPIVSVQGV AARALESGDE DYALERLLTE RSVSVNTAAA GGNANLMTIG
|
|---|
| |