Gene Bphy_2992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_2992 
Symbol 
ID6244473 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010622 
Strand
Start bp3349406 
End bp3351880 
Gene Length2475 bp 
Protein Length824 aa 
Translation table11 
GC content64% 
IMG OID642594795 
ProductTPR repeat-containing protein 
Protein accessionYP_001859208 
Protein GI186477738 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[O] Posttranslational modification, protein turnover, chaperones
[N] Cell motility 
COG ID[COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.000746825 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGAGCCG CACTTCCGAC GACACAAAGG ATCACAGTGG ATCACGCAAA TCTTCTCAAT 
ACCGCGCTCG CGCACCACCA GGCCGGCCGG CTCGCCGAAG CCAAGGCGAT CTACGACGAG
ATCCTGCGCG CCAATCCCCG GCATTCCGAT GCGTTGCATT TTCTCGGGCT GCTCGCCTGC
CAGATTCAAC AGTACGACGC GGGCATTACG CTGATGCGCC AGTCGATCGC GATTCTGCCC
AACGCGATCT ATCACAACAA CCTCGGCAAC GCGCTGCGCG AGCACGGGCA ACTAAAGCAG
GCGATCGACG GTTATCGCGA GGCCGTCACG CTCGATCCGG GCTACGCGGA AGCGCACAAC
AATCTGGGCA ATGCACTGCG CGAAGACCGT CAGCCGGACG CGGCGATGCG AAGCTGCGCG
CACGCCATCG AATTGCGGCC CGGTTTTGCG GAGGCATACA ACAATCTCGG CAACGCGTTA
AAAGATCTCG GCGAGCTGGA TAATGCCGCG CTTGCGTATC GCAAGGCGAT TTCGTTCAGG
CAGAACTACG CGGACGCGCA CAACAATCTC GGCAACGCGC TGATGGAGCA GGGCAAGTAC
GACGAGGCAA TCGACAGTTA TCGCAGCGCG ATCGCCCTCG ACGCGAACCG CGCGTTGATG
CACAACAGTC TGGGCACGCT GCTGCTTGCG CGCGGCGAAC TCGACGAGGC TGCGGCGAGT
CTGCAGAGGG CGGTCGAACT CGATCCCAAC AGGCCGGGCG TGCACAACAA CCTGGCCAAT
ACGCTGCGCG ACATGGGCAG ACTGGAAGAG GCGCGCACCC ATTACTCGCG GGCGTTGCAG
CTTGCGCAGG CGATCATCGA CTCGTACCGG GGCGGCGCGG CGGCGCCGTT TGCGCAAGTC
CGTTCGACCG AACCGCGCCT GACGCTCGCC GAGGGTTATG CGACGCTCGG CAATGCGTGG
TACGGCCTGT ATCGCTACGA CGAGGCGATC GACAGCTATT TGCGATCCGT CGAGCTTGCC
GACGACGATG CCGAAGTTCA TCACAATCTC GCCGTCGCGT ATCTGAAGAC GGAGCGTCCC
GCGCAAGCAC TGCATTACGC GCGCAAGGCG CTTGAACTCA AGGACGGTTC CTCGCGGATG
CACATCAATC TCGGCGACGT CCTGCGCTCG CTGGGCGAAC TGGAGGCCGC CGCGAACAGC
TATCGGAGCG CGATCGAGCG GTCGCCCGAT GCCGACGTCG CGCACACGGC ATTGCTGTTT
TGTGAGGCAA GCATGTCGCG GCGACCGGTC GAAGATTATC TGGCCGATGC CGTCTACTTC
GGCAAGCGCA TGGCCGCGAA CGTCACGCCG TTCACGCACA CGCGCATGCC GCGCGGCTCG
CGGCCGCTGC GCGTGGGCTT TGTCTCGGGC GATTTGCGCA CACATCCCGT CGGCATCTTC
ACCGAAAGCG TGTTGCGTCA TATCGATCCG TCGCGTGTCG AGCTGATCGC CTATCAGACC
AACGACGTCG AAGACGACAC GACGCAGCGT CTCAAGCCGC TTTTCGGTGA ATGGACGCAG
CTTTCGAAGC TCTCACGCGA GGCCGCCGCC AAGCGGATCT TCGACGATCG TATCGACATT
CTGCTCGACA TGTCGGGTCA CACGGCCTTC AACCGGCTCG CCGTGTTCGC GATGAAACCG
GCGCCCGTGC AGGTGACGTG GCTGGGGTTC TTTGCATCGA CGGGCATCGA GCAGATCGAC
TATGTGCTCG GCGACCGCTA TGTGTTGCCG CCCGAAGAAG CACATCATTT CATCGAAAAG
CCGTGGCATC TGCCGGACGG ATACCTGTGC ATGACGCCGC CCGCGCACGA TGTTGCCGTA
GGTGCGCTGC CGATGCTGGC GAATGGCTTC GTCACCTTCG GCTATCTCGG CAAGCTCGCG
AAAGTGACGG ACGACGTGCT CGATCTGTGG GCGCGCGTGC TGCGCGAAGT GCCCGGTTCT
CGCCTTCTCA TCAAGGCGCA TGAGCTCGAC CGCAAGCATG CCGTCGACGC GACGCGTCGG
CGCTTCGCCG GGCGCGGCCT CGACGCGGAA CGGCTTCTGC TCGAAGGCGG ATCGAAGCGC
GACGAGTACT TCAAGACGTA TCATCGCGTC GATATCGTGC TCAGTCCGTT CCCGTATCCG
GGCGGTACGA CGACGGCGGA AGCACTGTGG ATGGGGGTGC CCGTCGTCGC GATGAAGGGC
GACCGCTTTC TCGGTCACAT CTGCGAAAGC GTGCTGCAGT CGGCCGGCTT CGGCGACTGG
GTCACCGGCG ATGCGCAGGG CTACATCGCG ATTGCGCGCG CACTGGCCGC CGACCGCGAC
GCGCTGGCCA CGCTGCGCGC CGGTTTGCGC GAACATGTTC TGGCCTCGCC GATGTGTGAC
GCGCAACGCT TCGCGCGCAA CTTCGAAGAT GCGCTCGACG GCATGTGGCG CGTGTACGAG
CGAGACTCTG CCTGA
 
Protein sequence
MRAALPTTQR ITVDHANLLN TALAHHQAGR LAEAKAIYDE ILRANPRHSD ALHFLGLLAC 
QIQQYDAGIT LMRQSIAILP NAIYHNNLGN ALREHGQLKQ AIDGYREAVT LDPGYAEAHN
NLGNALREDR QPDAAMRSCA HAIELRPGFA EAYNNLGNAL KDLGELDNAA LAYRKAISFR
QNYADAHNNL GNALMEQGKY DEAIDSYRSA IALDANRALM HNSLGTLLLA RGELDEAAAS
LQRAVELDPN RPGVHNNLAN TLRDMGRLEE ARTHYSRALQ LAQAIIDSYR GGAAAPFAQV
RSTEPRLTLA EGYATLGNAW YGLYRYDEAI DSYLRSVELA DDDAEVHHNL AVAYLKTERP
AQALHYARKA LELKDGSSRM HINLGDVLRS LGELEAAANS YRSAIERSPD ADVAHTALLF
CEASMSRRPV EDYLADAVYF GKRMAANVTP FTHTRMPRGS RPLRVGFVSG DLRTHPVGIF
TESVLRHIDP SRVELIAYQT NDVEDDTTQR LKPLFGEWTQ LSKLSREAAA KRIFDDRIDI
LLDMSGHTAF NRLAVFAMKP APVQVTWLGF FASTGIEQID YVLGDRYVLP PEEAHHFIEK
PWHLPDGYLC MTPPAHDVAV GALPMLANGF VTFGYLGKLA KVTDDVLDLW ARVLREVPGS
RLLIKAHELD RKHAVDATRR RFAGRGLDAE RLLLEGGSKR DEYFKTYHRV DIVLSPFPYP
GGTTTAEALW MGVPVVAMKG DRFLGHICES VLQSAGFGDW VTGDAQGYIA IARALAADRD
ALATLRAGLR EHVLASPMCD AQRFARNFED ALDGMWRVYE RDSA