| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1730 |
|---|
| Symbol | nusA |
|---|
| ID | 6243221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 1974619 |
|---|
| End bp | 1976094 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642593520 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_001857958 |
|---|
| Protein GI | 186476488 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCG AAGTGTTGAT GCTGGTGGAT GCGCTGGCAC GCGAAAAAAA TGTCGACAAG
GACGTGGTGT TTGCCGCGCT CGAGGCAGCG CTCGCGTCTG CATCCAAGAA ACTCTTCGAC
GAAGACGCGG ACATCCGCGT TCATATCGAC CGTGAGAGCG GCGAGCACGA AACCTTCCGT
CGCTGGAAAG TCGTGCCCGA CGAAGCAGGC CTGCAGGAGC CCGATCAGGA AATCCTGTTG
TTCGAAGCGC GCGAGCAGAA GGCCGACGCG CAGATCGACG ACTTCCTGGA AGAACCTGTT
CCGTCCATCG AATTCGGCCG TATCGGCGCG CAGGCTGCCA AGCAGGTGAT CCTGCAGAAG
GTGCGCGACG CAGAACGCGA GCAGATCCTG AACGACTTCC TCGAGCGCGG CGAAAGCATC
ATGACGGGTA CCGTCAAGCG TCTCGACAAG GGCAACTTCA TTGTCGAATC GGGCCGTGTC
GAAGCGCTGC TGCGCCGCGA TCAGCTGATT CCGAAGGAAA ACCTGCGCGT CGGCGACCGT
GTGCGCGCCT ACATCGCGAA GGTCGATCGC ACCGCGCGCG GTCCGCAGAT CGAGTTGTCG
CGGACGGCGC CCGAGTTCCT GATGAAGCTC TTCGAAATGG AAGTGCCGGA AATCGAACAA
GGCCTGCTGG AAATCAAGGC GGCAGCACGC GATCCCGGCG TGCGGGCGAA GATCGGCGTT
GTCGCTTATG ACAAGCGTAT CGACCCCATC GGCACCTGCG TCGGCATTCG CGGTTCGCGC
GTGCAGGCCG TGCGCAATGA GCTCGGTGGC GAAAACGTCG ACATCGTGCT ATGGTCGGAA
GATCCCGCCC AGTTTGTGAT CGGCGCGCTC GCGCCGGCAG CTGTCCAGTC GATCGTCGTC
GATGAAGAAA AGCATTCGAT GGACGTCGTC GTCGACGAAA GCGAACTGGC CGTCGCTATC
GGCCGCAGTG GCCAGAACGT GCGTCTTGCC AGCGAGCTTA CCGGCTGGCA GATCAACATC
ATGACGCCGG ACGAGTCTGC ACAAAAGCAG AACCAGGAAC GCGGCGTACT GCGCGACCTG
TTCATGGCGC GTCTCGATGT CGACGAAGAA GTCGCCGACA TCCTGATCGA CGAAGGTTTC
ACGAGTCTCG AAGAGATCGC CTACGTGCCG CTCAACGAGA TGCTGGAAAT CGAAGCATTC
GACGAAGACA CCGTTCACGA ACTGCGCAAC CGCGCGCGTG ATGCGTTGTT GACGATGGCG
ATTGCGAACG AGGAGAAGGT CGAAGGCGTT GCGCTCGACC TGAAGAGCCT CGACGGCATG
GATGCCGAGC TGCTCGCGAA GCTGGCTGAA CATCAGATCC AGACGCGCGA CGACCTGGCT
GAACTGGCTG TCGACGAGCT GGTCGAGATG ACCGGCGTGA CTGAGGACGC CGCCAAGGCG
TTGATTATGA AGGCCCGTGA ACACTGGTTT CAATGA
|
|---|
| Protein sequence | MSREVLMLVD ALAREKNVDK DVVFAALEAA LASASKKLFD EDADIRVHID RESGEHETFR
RWKVVPDEAG LQEPDQEILL FEAREQKADA QIDDFLEEPV PSIEFGRIGA QAAKQVILQK
VRDAEREQIL NDFLERGESI MTGTVKRLDK GNFIVESGRV EALLRRDQLI PKENLRVGDR
VRAYIAKVDR TARGPQIELS RTAPEFLMKL FEMEVPEIEQ GLLEIKAAAR DPGVRAKIGV
VAYDKRIDPI GTCVGIRGSR VQAVRNELGG ENVDIVLWSE DPAQFVIGAL APAAVQSIVV
DEEKHSMDVV VDESELAVAI GRSGQNVRLA SELTGWQINI MTPDESAQKQ NQERGVLRDL
FMARLDVDEE VADILIDEGF TSLEEIAYVP LNEMLEIEAF DEDTVHELRN RARDALLTMA
IANEEKVEGV ALDLKSLDGM DAELLAKLAE HQIQTRDDLA ELAVDELVEM TGVTEDAAKA
LIMKAREHWF Q
|
|---|
| |