| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1406 |
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| Symbol | |
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| ID | 6242897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010622 |
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| Strand | + |
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| Start bp | 1582366 |
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| End bp | 1584708 |
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| Gene Length | 2343 bp |
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| Protein Length | 780 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642593189 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001857634 |
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| Protein GI | 186476164 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.252881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000000874326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGGACA CCGTAGCACT CAAGATCGTA CAGCGCATCG CCACCGAACT CACCGTCCAA
CCGCGCCAGG TCGCGGCCGC GGTGGCCCTT CTCGACGAAG GCGCGACTGT TCCGTTTATC
GCCCGGTACC GGAAGGAAGT CACCGGCAAT CTCGACGACA CGCAACTGCG CACGCTCGAA
GAACGCCTGC TCTATCTGCG CGAACTCGAA AACCGTCGCG CCGCGATCAT CGCGAGCATC
GATGAGCAGG GCAAGCTCAC GGACGAGTTG CGCACCGCGA TCGAAGCCGC CGACAGCAAG
CAGGTGCTGG AAGATCTCTA TCTGCCGTAC AAGCCGAAGC GCCGCACGCG CGCGCAGATC
GCCCGCGAAG CCGGTCTGCA GCCGCTCGCC GAGGCGCTGC TCGCCAATCC GCTGCTCGAT
CCGCAGACGG AAGCTGCGCA ATATGTCGAC GCCGAGAAAG GCATCGCGGA CGTCAAGGCC
GCGCTCGACG GTGCGCGTGA CATCCTCTCG GAGCAGTTCG GCGAAACGGC CGACGTGCTC
GGCAAGCTGC GCGACTATCT GTTCAATCAA GGCGTCCTGA CGTCGACGGT GATCGAAGGC
AAGGAAGGCG ACGAAGGCGA GAAATTCCGC GACTACTACG ACTATTCCGA AACGATCCGC
ACGGTGCCGT CGCACCGCGC GCTCGCGCTC TTCCGCGGCC GCAATGCGGG CGTGCTGATG
ATCAAGCTCG GGCTTGGCGA AGAACTGGAC GCACAGGTGC CGCATCCCGG CGAAGCGATG
ATCGCGCGGC ACTTCGGCAT TGCGAATCAG GGCCGTCCCG CCGACAAGTG GCTGGCGGAC
GTGTGCCGCT GGTGCTGGCG CGTGAAGGTG CAGCCGCACA TCGAAAACGA ACTGTTGACG
AATCTGCGCG AGGAAGCCGA AAGCGAGGCG ATCCGCGTGT TCGCGCGCAA CCTGGAGGAT
CTGCTGCTCG CCGCACCGGC CGGCCCGAAG GCCGTGATCG GCCTCGATCC GGGCCTGCGC
ACGGGCGTGA AGGTAGCCGT CGTCGATCGC ACGGGCAAGC TGCTCGCGAC CGATACGATC
TATCCGCACG AGCCGCGTCG CGACTGGGAC GGCTCGCTCG CGAAACTCGC GCGCATTGCC
GCGCAGACGC AGGCGGAACT GGTGAGTATC GGCAACGGCA CGGCATCGCG TGAAACGGAC
AAACTGGCGA GCGAACTGAT CACGCGTCAT CCCGAGCTGA AGCTGCAGAA GATCGTCGTG
TCGGAAGCGG GTGCGTCGGT GTACTCGGCG TCGGAGCTGG CCGCGAAGGA ATTCCCGGAA
CTGGATGTAT CGCTGCGCGG CGCGGTGTCG ATTGCACGAC GCCTGCAAGA CCCGTTGGCG
GAACTCGTAA AAATCGAGCC GAAGGCGATC GGCGTCGGCC AGTATCAGCA TGACGTGAAC
CAGCGCGAAC TCGCGCGTTC GCTCGATGCC GTCGTCGAAG ACTGCGTGAA CGCGGTCGGC
GTAGATGCGA ATACGGCGTC CGTCGCGCTG CTTGCACGCG TGTCCGGCCT GAACGCGACG
CTCGCGCGCA ACATCGTCGA TTATCGCGAT GCGAACGGCC CGTTCCCGAC GCGCGAGCAT
CTGCGCAAGG TGCCGCGCCT CGGCGACAAG ACTTTCGAGC AGGCTGCAGG CTTTTTGCGG
ATTAACGGCG GCGAGAATCC GCTCGATCGT TCTTCGGTGC ACCCGGAAGC GTATCCCGTG
GTCGAGCGGA TGCTGGCGAA GATCGCGAAG AACATCGGTG AGGTACTCGG CAATCGCGAT
GCGCTTTCAC GGCTGTCGCC TGCCGAATTC GTCGATGAGC GCTTTGGTCT GCCGACGGTG
CGCGACATTC TCGCCGAACT CGAGAAGCCG GGCCGCGATC CGCGCCCCGA GTTCAAGACA
GCGACGTTCC GTGAAGGCGT CGAGAAGATT TCGGATCTGT CGCCCGGCAT GGTGCTCGAA
GGCGTCGTGA CGAATGTGGC CGCGTTCGGT GCGTTTATCG ATATTGGTGT CCATCAGGAT
GGACTCGTGC ATGTGTCGGC AATGTCGACG AAGTTCATCA AGGATCCGCA CGAAGTCGTG
AAGGCCGGGC AGATCGTCAA GGTGAAGGTG CTGGAGGTCG ACGTCAAGCG TCAGCGGATT
TCGTTGACGA TGCGGATGGA CGACGATGTT GCTGCCAGCG GTGGTGGCGC GGCGGCGCGC
GCGGGGCAGC AGGATCGGGG TGGGCGGTCG GGCGGCGCAG GTGCCCGGGC GCAGCAGTCC
CGGTCTCGGG ACGCCGAGCC CGTTAATGCG ATGGCTGCTG CTTTCGCCAA ATTGAAGCGG
TAA
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| Protein sequence | MTDTVALKIV QRIATELTVQ PRQVAAAVAL LDEGATVPFI ARYRKEVTGN LDDTQLRTLE
ERLLYLRELE NRRAAIIASI DEQGKLTDEL RTAIEAADSK QVLEDLYLPY KPKRRTRAQI
AREAGLQPLA EALLANPLLD PQTEAAQYVD AEKGIADVKA ALDGARDILS EQFGETADVL
GKLRDYLFNQ GVLTSTVIEG KEGDEGEKFR DYYDYSETIR TVPSHRALAL FRGRNAGVLM
IKLGLGEELD AQVPHPGEAM IARHFGIANQ GRPADKWLAD VCRWCWRVKV QPHIENELLT
NLREEAESEA IRVFARNLED LLLAAPAGPK AVIGLDPGLR TGVKVAVVDR TGKLLATDTI
YPHEPRRDWD GSLAKLARIA AQTQAELVSI GNGTASRETD KLASELITRH PELKLQKIVV
SEAGASVYSA SELAAKEFPE LDVSLRGAVS IARRLQDPLA ELVKIEPKAI GVGQYQHDVN
QRELARSLDA VVEDCVNAVG VDANTASVAL LARVSGLNAT LARNIVDYRD ANGPFPTREH
LRKVPRLGDK TFEQAAGFLR INGGENPLDR SSVHPEAYPV VERMLAKIAK NIGEVLGNRD
ALSRLSPAEF VDERFGLPTV RDILAELEKP GRDPRPEFKT ATFREGVEKI SDLSPGMVLE
GVVTNVAAFG AFIDIGVHQD GLVHVSAMST KFIKDPHEVV KAGQIVKVKV LEVDVKRQRI
SLTMRMDDDV AASGGGAAAR AGQQDRGGRS GGAGARAQQS RSRDAEPVNA MAAAFAKLKR
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