Gene Bphy_1379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_1379 
Symbol 
ID6242870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010622 
Strand
Start bp1548464 
End bp1549135 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content61% 
IMG OID642593161 
ProductNLP/P60 protein 
Protein accessionYP_001857607 
Protein GI186476137 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0123318 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCACC GAAATCTCAC CCAGGCTTGC ACGCGCGTCG TCGCCGGGAT GTTCATTGGC 
GTACTGATGG CCGCAGCTCC CGGCGTTTTC GCCGATGAAG TAAGCAGCTT TAACCAGAAT
GCCTCATTTT CGACCTCTTC CGGGTCGAAT TCAGTGTCCT CCGTCACACA GAATACGCCA
AGCGCCACCT CGAATTCCGA GAGTGGCGCG CGTTCGTTTC TGTCCGGCAT GGCCGGAAAG
GCGGGTGACG TTGTGGTCGG CGCCCTCAAC ATGATCGGCG TGCGCTACCG TTGGGGCGGC
GACACCCCGG ACTCCGGCCT TGATTGCAGC GGCTTCGTTC GCTACGTGTT CCAGGACACG
CTGGGCATGG CGCTGCCGCG CCGCGCGGAA GAAATGAGCC GTGTCGGCGA GAAGGTTCGG
GTTTCCGACC TGAAGCCGGG AGATCTCGTG TTCTTCAATA CGATGCGCCG AACGTTCTCG
CACGTCGGCA TCTACATCGG CGACAACAAG TTCGTGCATT CGCCGTCGAC GGGCAGCACG
ATCCGCGTCG ACGACATGGA TGACGGCTAC TGGGAAAAAC GCTTCACGGG CGCACGCCGC
ATCGAGAGCA CGGTGCCGCA GCAGCAGGAA CTGCGTCAGC GTGTAAGCGC GACGATCGGT
GGCAGCAACT AA
 
Protein sequence
MQHRNLTQAC TRVVAGMFIG VLMAAAPGVF ADEVSSFNQN ASFSTSSGSN SVSSVTQNTP 
SATSNSESGA RSFLSGMAGK AGDVVVGALN MIGVRYRWGG DTPDSGLDCS GFVRYVFQDT
LGMALPRRAE EMSRVGEKVR VSDLKPGDLV FFNTMRRTFS HVGIYIGDNK FVHSPSTGST
IRVDDMDDGY WEKRFTGARR IESTVPQQQE LRQRVSATIG GSN