| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1348 |
|---|
| Symbol | |
|---|
| ID | 6242839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | + |
|---|
| Start bp | 1514417 |
|---|
| End bp | 1515721 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642593125 |
|---|
| Product | succinyldiaminopimelate transaminase |
|---|
| Protein accession | YP_001857576 |
|---|
| Protein GI | 186476106 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.248718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACGC ATCCGGCCTT TGCGCCGATG CCGCCGCGCG CCGCCTTCAC CTGCGTCAGT
CACGCCGAAC CACGCCCGAA CCGCCAAGTG AACCCGCTAC TCGACTCCCT TCAGCCTTAT
CCGTTCGAAA AACTGCGCCT GCTCTTCAAG GACGTCACGC CGCCCGCGCA TCTCTCCCAT
ATCAGCTTCG GAATCGGCGA GCCGAAACAT CCGACGCCTG AACTGATCCG CAAAGCGGTG
ATCGATTCCC TCGGCGGTCT CGCGGCCTAT CCGGCGACTG TCGGCGCGCC GGCTTTGCGC
GAAGCGATCG CGAAGTGGGT CACGACGCGC TACAACCTGC CGCCCGTCGA CGCTGCCACG
CAGGTGTTGC CCGTGGCAGG CTCGCGCGAG GCGCTGTTCG CGCTCGCGCA AACGGTGATC
GATCCGGGGA AAAGCGCCGG CGGCGAGCCT GCGATCGTAC TCTGTCCGAA CCCGTTCTAT
CAAATCTACG AGGGCGCGGC GCTACTCGCG GGCGCTCAGC CGTACTTCGC CAACAGCGAC
CCGACGCGCA ACTTCGCCTG CGACTACTCG GCCATCCCCG ACGACGTCTG GGCGCGCACC
CAACTGCTGT ACGTCTGCTC GCCGGGCAAC CCGACGGGCG CGGTGCTGAC GCTCGACGAC
TGGCGTGAGC TGTTCGAACT GTCGGACCGC CACGGCTTCG TGATCGCCTC CGACGAATGC
TACTCCGAGA TCTATTTCGA CGAGTCGCGG CCGCCGCTCG GCGGGCTGGA AGCGGCGCAC
AAACTCGGCC GCGGCTTCGA GCGGCTCGTG ATGCTGTCCA GCCTGTCGAA GCGCTCCAAC
GTGCCGGGCA TGCGCTCGGG CTTCGTCGCA GGCGATGCGT CCATCCTCAA GCAGTTCCTG
CTGTACCGCA CGTATCACGG CGCGGCGCTG TCGACCGTCT ATCAGACGGC CAGCATCGCC
GCCTGGAACG ACGAAGCGCA CGTGCGCGAA AACCGCGCGA TGTACGCGCA GAAGTTTTCG
ACCGTGACGC CGATGCTCGC CGGCGTGCTC CATGTCAAGC TGCCCGACGC CGCGTTCTAC
CTATGGGCGA ACGTTGCGCG CACGGGGCTC TCGGATACCG CGTTCGCCCA GCGGCTGTAC
GCCGACTATA ATGTGACGGT TCTGCCCGGC TCGTATCTCG CACGCACCGC GCACGACACG
AACCCCGGCC GCGATTTTGT CCGCCTCGCG CTGGTCGCGG GCGTCGACGA ATGCACGGAG
GGCGTGCAGC GCATCGTCGA ATTCTGCCGC TCGCTGGAAC GCTAG
|
|---|
| Protein sequence | MPTHPAFAPM PPRAAFTCVS HAEPRPNRQV NPLLDSLQPY PFEKLRLLFK DVTPPAHLSH
ISFGIGEPKH PTPELIRKAV IDSLGGLAAY PATVGAPALR EAIAKWVTTR YNLPPVDAAT
QVLPVAGSRE ALFALAQTVI DPGKSAGGEP AIVLCPNPFY QIYEGAALLA GAQPYFANSD
PTRNFACDYS AIPDDVWART QLLYVCSPGN PTGAVLTLDD WRELFELSDR HGFVIASDEC
YSEIYFDESR PPLGGLEAAH KLGRGFERLV MLSSLSKRSN VPGMRSGFVA GDASILKQFL
LYRTYHGAAL STVYQTASIA AWNDEAHVRE NRAMYAQKFS TVTPMLAGVL HVKLPDAAFY
LWANVARTGL SDTAFAQRLY ADYNVTVLPG SYLARTAHDT NPGRDFVRLA LVAGVDECTE
GVQRIVEFCR SLER
|
|---|
| |