| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1006 |
|---|
| Symbol | |
|---|
| ID | 6242504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 1127503 |
|---|
| End bp | 1128411 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642592782 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_001857241 |
|---|
| Protein GI | 186475771 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.109233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.62289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACAAT TTTCGGTCTT TCGTGCACAC CTCACGCACA GCCGTGCGCG GCTCCTTTCC
CCACAAGCCA ATCCCGTGAA TTTCGACGAA TATTGCCAGC AGAAAGCAGC GCCCCCCGGT
TCGAGCACTT ACTACGCGTT GCGTCAGGCG CCCGTCGCGC GGCAGCCGCT GCTCACCGCG
CTGTTCGCAC TGCGTCGCGA GTTCGAAGAG ACGGTGAAGG AAACGACGGA CCCGACCATC
GGCCGCACGA AGCTGGCGTG GTGGCAAAAG GAAGCAGCGG CGCTCGCGGC CGGCGAGCCG
ACGCACCCCG TCTCGCAGGC ACTCGCCGCG CATTTGCCCG ACGTGCAGGC GGAGTATCCC
GCGCTGCAGG GCATAATCGC GGGGTTCGAG ATGGATCTCG ACCAGGCGCG CTATCTTGAC
TATCCGAACT TACGGCGCTA CATGGCGGGC GTCGGCGGCA CCTTCGCGTC CGTCGTCGCC
CGCGCAACGG CGCACGAGCC GTCGCAGGCG GCGTCGTGGG CTGCGCCGCT CGGCGAAGCG
TTGATGCTCG CGCAGATCGT CGTGGAGCTC GGCAACGACG CGCGGCACGG ACGCATCTAC
ATCCCCATCG ACGAGATGCA GCGCTTCAAC GTGACGGCCG CGGATCTGAT CAACCGAAAA
TACACGGACG CGTTCACCGA GATGATGCGC TTTCAGACGG CGCGCGCACG CGACGCGATT
CGCAAGGCGC TCGACGCACT CCCCGTCGGC GAGCGCCACT CGCAAAGCAC GCTGCGCGCG
CTGGCAGCGC TGGCGCTGGC GTTGCTCGAT GAAATCGAAC GCGACGGCTA CCATGTGCTG
CATCAGCGCA TCGCGCTCAC GCCGATCCGC AAGTTATGGG TCGCGTGGCG CGCGGCACGC
AAACACTAA
|
|---|
| Protein sequence | MLQFSVFRAH LTHSRARLLS PQANPVNFDE YCQQKAAPPG SSTYYALRQA PVARQPLLTA
LFALRREFEE TVKETTDPTI GRTKLAWWQK EAAALAAGEP THPVSQALAA HLPDVQAEYP
ALQGIIAGFE MDLDQARYLD YPNLRRYMAG VGGTFASVVA RATAHEPSQA ASWAAPLGEA
LMLAQIVVEL GNDARHGRIY IPIDEMQRFN VTAADLINRK YTDAFTEMMR FQTARARDAI
RKALDALPVG ERHSQSTLRA LAALALALLD EIERDGYHVL HQRIALTPIR KLWVAWRAAR
KH
|
|---|
| |