| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0997 |
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| Symbol | |
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| ID | 6242495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010622 |
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| Strand | - |
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| Start bp | 1117010 |
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| End bp | 1120504 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642592773 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001857232 |
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| Protein GI | 186475762 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACA TCGCCGCATC CACGCAGTCC GCTTCTTCAA CCCCTGTCGC GCTGGTCAAA
GCCGGCCAGC GTTTCGTGTT CGATGGCACG CACGGCTCGT CCGACGCGCT GCTGATCGCC
CGCTATCACA CCGCGCACAA GGCGCAGATG CCGCTGCTCG CCGTCGTCTG CGCGAGTGCC
GTCGATGCGC AGCGGCTGTC GCAGGAACTC GCGTTCTTCG CGCCGGATGC GCGCATCCGT
CTGCTGCCCG ACTGGGAAAC GCTGCCGTAC GACTCGTTCT CGCCGCACCA GGATCTCGTG
TCCGAGCGGC TCGCTACCCT GCACGATCTC GGCGAAGGCC GTTGCGATAT CCTGCTGGTC
CCGGCGACGA CCGCGCTCTA CCGGATGCCG CCCGCCTCGT TCATGGCCGC ATACACGTTT
TCCTTCTCGC AGGGCGAGCG TCTCGACGAA GCGAAGCTGA AGGCACAGCT GACGCTCGCC
GGCTATGAAC ACGTGAGCCA GGTCGTGCGG CCGGGCGAAT ACTGCGTACG CGGCTCGCTG
ATCGACCTCT TTCCGATGGG CTCGCCGCTG CCGTACCGGA TCGACCTGTT TGACGATCAG
GTGGACTCCA TCCGCGCGTT CGATCCCGAT TCGCAGCGCA GCCTGTATCC CGTGAAGGAC
GTGCGCCTGT TGCCGGGCCG TGAGTTTCCG TTCGACGAAG CCGCGCGCAC CGCGTTTCGC
AGCCGCTGGC GGGAGGTGTT CGAAGGCGAT CCGAGCCGCG CGTCGATCTA TAAGGACATA
GGCAACGGCG TGCCGTCGGC GGGCATCGAA TACTATCTGC CCCTCTTCTT CGAAGAGACC
GCGACGCTCT TTCACTATCT GCCCGAGGCT GCGCAACTGG TGTTCGTCGG CGATCTGGAC
GCCGCCATCC GGCGCTTCAC GGCGGACACC AAACAACGCT ACGGCTTTCT GTCGCACGAC
CGCGACCGGC CGATTCTCGA ACCGAAGCGC CTGTTCCTGT CGGACGACGA TTTCTACACG
TTCGCCAAGC CGTTCGCGCG CCTGTCGCTG CCCGGCAACG CGGGCGGAGG CTGGGCCGTG
CCGCTGCCCA ATCTCGCCAT CGACCGCCAC GCCGACGACC CCGTCTCCGC GTTGCGCGCG
TGGCTCGACA CGACGCCGAA CCGCGTGCTG TTGGCGGCGG AATCGGCGGG CCGCCGGGAA
ACGATCGCAC AATTGCTGGC CGACAACGAC CTGCACCCCG CGTCCGCCGA CGGCTACGAA
GACTGGCTGA CGTCCGACGC GCGGTTCGCG CTCAGCGTCG CGCCGCTCTC AAACGGGTTT
GCGATCCCCT CCGAAGGCGT CGCGTTCCTG ACGGAAACGG AACTGTACGG CCCGCTCGCG
CGCAAGACGG GACGACGCCG CCAGGAACAG GCGAGCAACG TCGATTCGAT GGTGCGCGAT
CTGTCGGAGC TGAAGGTCGG CGACCCCGTC GTGCATTCGC AGCACGGCAT CGGCCGCTAC
ATGGGCCTCG TGACGATGGA CCTCGGTGAA GGCGAAACCG AGTTCCTGCA CCTCGAATAC
CAGGGCGACA GCAAGCTCTA CGTGCCCGTG TCGCAGTTGC ACGTCATTTC GCGCTACAGC
GGCGCCGATC CCGACAGTGC GCCGCTGCAC GCACTCGGCT CGGGACAGTG GGAAAAGGCG
AAGCGCAAGG CTGCTCAGCA GATCCGCGAT ACGGCGGCCG AACTCCTGAA CCTGTACGCT
CGCCGTGCCA TGCGCGAAGG CCATGCCTTC CCGCTTGATC CGCGCGACTA CGTGAAATTC
GCGGAAAGTT TCGGCTTCGA GGAAACGCCT GACCAGGCGG CCGCGATCGC CGCCGTGATC
GGCGACATGA CAAGCGGCAA GCCGATGGAT CGCCTCGTGT GCGGCGACGT CGGTTTCGGC
AAGACGGAAG TCGCGTTGCG CGCGGCCTTC ATCGCGGTGA TGGGCGGCAA GCAGGTCGCG
CTGCTCTCGC CCACCACGCT GCTCGCCGAA CAGCACACGC AGACCTTCAC CGACCGCTTC
TCCGACTGGC CGGTGCGCAT CGCCGAATTG TCGCGCTTCA AGACGGGCAA GGAAGTCAGC
GCGTCGATCC AGCAGATCAA CGAAGGCAGC GTCGATATCG TGATCGGCAC GCACAAGCTG
CTCTCGTCGG ATGTGCAGTT CAAGCGGCTC GGGCTCGTGA TCATCGACGA GGAGCACCGT
TTCGGCGTGC GCCAGAAGGA AGCGCTCAAA GCGCTGCGTG CCGAAGTCGA TGTGCTGACG
CTCACCGCGA CGCCAATTCC GCGTACGCTC GGCATGGCGC TCGAAGGTCT GCGCGACTTC
TCCGTGATCG CCACAGCGCC GCAAAAGCGC CTCGCGATCA AGACCTTCGT GCGGCGCGAG
GAAGACGGCG TGATCCGCGA AGCCATGCTG CGCGAACTGA AGCGCGGCGG CCAGGTGTAC
TTCCTGCACA ACGAGGTCGA AACCATCGAA AACCGCCGCC AGATGCTCGA AGCGCTCGTG
CCCGAAGCGC GCATCGCGGT GGCGCACGGC CAGATGCACG AGCGCGAACT CGAACGCGTG
ATGCGCGATT TCGTGGCGCA ACGCGCGAAC GTGCTGCTGT GTACCACGAT CATCGAAACG
GGTATCGACG TGCCGAGCGC GAACACGATC CTGATTCATC GCGCCGACAA ATTCGGTCTT
GCGCAACTTC ACCAGTTGCG CGGGCGTGTC GGGCGCTCGC ATCACCAGGC GTACTCGTAT
CTGCTCGTGC ACGATCCGCA AGGTCTCACG AAGCAGGCGC AACGACGTCT CGAAGCGATC
CAGCAGATGG AAGAGCTCGG TGCCGGCTTC TATCTGGCGA TGCACGACCT CGAAATCCGC
GGCACGGGGG AAGTGCTCGG CGACAAACAG TCGGGCGAGA TTCACGAGAT CGGTTTCCAG
CTCTATACCG ACATGCTGAA CGACGCGGTA AAGGCGCTGA AAAACGGCAA GGAGCCGGAC
CTCACGGCGC CACTGGCGGC CACGACGGAG ATCAACCTGC ATACGCCCGC GATTCTTCCC
GCCGACTATT GCGGCGACGT GCAGGAGCGT CTGTCGCTGT ACAAGCGTCT CGCGAACTGC
GAGCACAACG ATTCGATCGA CGGCATTCAG GAAGAATTGA TCGACCGTTT CGGCAAGATG
CCGCCGCAAG CGCATGCGCT CGTCGAAACA CACCGCTTGC GCCTGGCCGC CAAGCCGCTC
GGCATTTCGA AGATCGACGC GGGCGAGGCT GTGATCGGCC TGCAGTTCAT CCCGAATCCG
CCCATCGACG CGATGCGGAT CATCGAGATG GTTCAGAAGC ATAAGCACAT CAAGCTCGCG
GGTCAGGACA AGCTGCGCAT CGAAACGCGC AGTCCCGATT TCACGGTGCG CGTCGCGACC
GTGAAGGAGA CGCTGCGCGC GCTCGGCACA CCGTCCAGGG GCGCCGCGGA TCAGCGCGTG
GCGTCGTCGC GCTAG
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| Protein sequence | MPDIAASTQS ASSTPVALVK AGQRFVFDGT HGSSDALLIA RYHTAHKAQM PLLAVVCASA
VDAQRLSQEL AFFAPDARIR LLPDWETLPY DSFSPHQDLV SERLATLHDL GEGRCDILLV
PATTALYRMP PASFMAAYTF SFSQGERLDE AKLKAQLTLA GYEHVSQVVR PGEYCVRGSL
IDLFPMGSPL PYRIDLFDDQ VDSIRAFDPD SQRSLYPVKD VRLLPGREFP FDEAARTAFR
SRWREVFEGD PSRASIYKDI GNGVPSAGIE YYLPLFFEET ATLFHYLPEA AQLVFVGDLD
AAIRRFTADT KQRYGFLSHD RDRPILEPKR LFLSDDDFYT FAKPFARLSL PGNAGGGWAV
PLPNLAIDRH ADDPVSALRA WLDTTPNRVL LAAESAGRRE TIAQLLADND LHPASADGYE
DWLTSDARFA LSVAPLSNGF AIPSEGVAFL TETELYGPLA RKTGRRRQEQ ASNVDSMVRD
LSELKVGDPV VHSQHGIGRY MGLVTMDLGE GETEFLHLEY QGDSKLYVPV SQLHVISRYS
GADPDSAPLH ALGSGQWEKA KRKAAQQIRD TAAELLNLYA RRAMREGHAF PLDPRDYVKF
AESFGFEETP DQAAAIAAVI GDMTSGKPMD RLVCGDVGFG KTEVALRAAF IAVMGGKQVA
LLSPTTLLAE QHTQTFTDRF SDWPVRIAEL SRFKTGKEVS ASIQQINEGS VDIVIGTHKL
LSSDVQFKRL GLVIIDEEHR FGVRQKEALK ALRAEVDVLT LTATPIPRTL GMALEGLRDF
SVIATAPQKR LAIKTFVRRE EDGVIREAML RELKRGGQVY FLHNEVETIE NRRQMLEALV
PEARIAVAHG QMHERELERV MRDFVAQRAN VLLCTTIIET GIDVPSANTI LIHRADKFGL
AQLHQLRGRV GRSHHQAYSY LLVHDPQGLT KQAQRRLEAI QQMEELGAGF YLAMHDLEIR
GTGEVLGDKQ SGEIHEIGFQ LYTDMLNDAV KALKNGKEPD LTAPLAATTE INLHTPAILP
ADYCGDVQER LSLYKRLANC EHNDSIDGIQ EELIDRFGKM PPQAHALVET HRLRLAAKPL
GISKIDAGEA VIGLQFIPNP PIDAMRIIEM VQKHKHIKLA GQDKLRIETR SPDFTVRVAT
VKETLRALGT PSRGAADQRV ASSR
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