| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0022 |
|---|
| Symbol | |
|---|
| ID | 6244582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | + |
|---|
| Start bp | 23411 |
|---|
| End bp | 25324 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642591783 |
|---|
| Product | type VI secretion protein |
|---|
| Protein accession | YP_001856263 |
|---|
| Protein GI | 186474793 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGC CGCATCAACC ACCCGCAGAC CCGGAACTGC TCGAATACTA CACGCGCGAA
TTGATGTACA CGATTGCGCT CGCGCAGGAA TTCGCAGCGC AACATCCGAA GATCGCTGCA
CGTCTGGGTA TGCAGGCGGG CGAGATCGGC GACCCCTATG TCGAGCGGCT GGTCCAGGGG
GCGTCCTTCA TGAATGCGCG GACGCAGATG CGCATCGATG CCGCGTTTCC GGAACTGATG
CAGCCGATGC TGGAAACGGT CTATCCGAAT TACATCCGGC AGACGCCCTC GATTGGCGTG
GCCCGCCTGT ATCCGGGACA CGAAAGCGGC CACCTCGGAC AGGGCTTTCA CATTCCGCGC
GGCACGGCGT TCACCTCGCA CACGCCTGCG GGCGAGAATA CGTCCTGCGT CTTCCGCAGC
AGCCAGGACG TGACGGTCTA TCCGCTGCGA ATCAAAGTCG CACGGGTGAC GCTGATTCCT
CCCGACATTC CATCGCTCGG CCACTACGTG GCGGACGGCC AGCAGGTGCG TGGCGCGGTG
CGCCTCACCC TTGAGACGAC CAACGGCGCG TCCATTGCGA CCCTGGAGGA GCTGGACCGG
CTACCCCTAT ATCTTGCCGG GGACGAGCGT ATCGCATCGC ACCTGTTCGA ACTGATTCAC
GCGGCGGGCA TTGCCACGGT CATGGCCGCA CCGGGCCGGT TCGCGGACGG ACCACTTTAC
GGCGTCACGC GTGGTGCGGT GGTCCATGAA GGCATTGACC TGGAGCAGGC GGTGCTGCCC
GATGTGCCGC GCACGCTGCA TGGGCATGGT CTTTTGCAGG AGTACTTCGC GTGTCCGGCC
CGCTTCTGGT TCCTTGCACT GACCGGGCTT GCCCAGGGCC TGAAGGCCAT CGAAGGCAAT
GCAGTCGAGA TCGTCATCCT GCTCAACCGC GCGCCCGGAG TGCTGGCCGA TACGGTGGAT
GCGTCGCATT TTGCGCTCTT CTGTACGCCG GTCGTGAACC TCTTTCCGAT GCGTACGAAA
AACCTTCCCA TCGACCGGGA GCAGTCCGAA CACCGGCTCG TGCCGGTGCC CGATGCGCCC
GCCGACTTCG ACCTGCGCTC GGTGGATGCT GCGCGCGGTC AGGTCTCCGA AGAGGATAGC
GAGGAGGTGC GGTTCGAGCC CAGGGACCGC CCGCTTGGCG GCGGCGGTTC CGGCGAGGGG
CATTACTTCG CCCTGCGCCG TCAGTTGAAC CTGGTTCAGG GCGGCGGGCG GCAGTACGGC
ACGCGTCGCC CCTTCACCGA GACGCAGACC TTCATTTCGC TCGTGAACAG CCAGGGCCGG
CCCGACGACA GCGGTATCCG TTTCCTGTCG CTCGACGCGT GGCTGACCAA CCGGGACCTG
CCATCCCTCC TCGAATGCAA TGGCCTAAAC GACCTCACGC TTGCCGGATC GAAGCCGGTG
GTCAGCGTCG GCTTTGTGCG TGCGCCGTCC GCACCGAAAC CGCCGCTCGC GCGCGGTGAT
CTGGCCTGGC AACTGATGGG GCAACTGAAG CTCGACTACC AGATGTTCGA CGATCGGTAC
AGCGAACCCC AGCCGGGCGA AGGCGTGCGC CGCCGTCTGC GCCTCTATGT GATGCCGGAT
GCCGGTGCCC TTGGGCGGCA GGTCGAAAGC CTCGTGAGCG CAACGGCAAC ACCGGTCAAC
GAGATGCTGG CCGGTAACGG TCCGATCGTG TTCGGGCGTG GCATCGAATG CGAATTTACG
TTCGATGAAA GCGGCTTCGA CGGTGTGAGC CCCTATACCC TGGCGCTGGT GCTGGAGCAT
TACGTCGCGC GTCACGTCTC GATGCATTCG TTCACGACCA CTGTGCTGCA TTCGAAACAG
CGCGGCCTGA TCGCCCAATG GCCGCCGCGC ATGGGTACGC GCGAGGTCTG CTGA
|
|---|
| Protein sequence | MTKPHQPPAD PELLEYYTRE LMYTIALAQE FAAQHPKIAA RLGMQAGEIG DPYVERLVQG
ASFMNARTQM RIDAAFPELM QPMLETVYPN YIRQTPSIGV ARLYPGHESG HLGQGFHIPR
GTAFTSHTPA GENTSCVFRS SQDVTVYPLR IKVARVTLIP PDIPSLGHYV ADGQQVRGAV
RLTLETTNGA SIATLEELDR LPLYLAGDER IASHLFELIH AAGIATVMAA PGRFADGPLY
GVTRGAVVHE GIDLEQAVLP DVPRTLHGHG LLQEYFACPA RFWFLALTGL AQGLKAIEGN
AVEIVILLNR APGVLADTVD ASHFALFCTP VVNLFPMRTK NLPIDREQSE HRLVPVPDAP
ADFDLRSVDA ARGQVSEEDS EEVRFEPRDR PLGGGGSGEG HYFALRRQLN LVQGGGRQYG
TRRPFTETQT FISLVNSQGR PDDSGIRFLS LDAWLTNRDL PSLLECNGLN DLTLAGSKPV
VSVGFVRAPS APKPPLARGD LAWQLMGQLK LDYQMFDDRY SEPQPGEGVR RRLRLYVMPD
AGALGRQVES LVSATATPVN EMLAGNGPIV FGRGIECEFT FDESGFDGVS PYTLALVLEH
YVARHVSMHS FTTTVLHSKQ RGLIAQWPPR MGTREVC
|
|---|
| |