| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1976 |
|---|
| Symbol | |
|---|
| ID | 6201088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 2259908 |
|---|
| End bp | 2260693 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641705964 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001833088 |
|---|
| Protein GI | 182678942 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1877] Trehalose-6-phosphatase |
|---|
| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.7461 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAC CGACCGCACG AATCAAGGAC ACGACAATCA AGGACACGAA GCCTGCGGCA
GAGCCCGGGC TGTGGAAGCT GATGCCTTGC AGCACCAGCG CCTTTTTCTT CGATGTCGAT
GGGACTTTGC TCGATATCAA GCCCCATCCG GCCGATGTTG TCGCGGATGC GGGTTTGAAA
AGCCTTTTGC TCCAATTGGC CGCCAAAACC AAAGGGGCTT TGGCCCTGGT GAGCGGGCGC
ATGATCGAGG ATATAGACCG GATCTTCGTG CCACTCGTGC TCCCAGCCGC AGGTCTTCAC
GGCGGGCAAA TTCGTCTCTC CCAGACGGTT GAAATGCTGG CCTCGCGGCA AAATATTGAT
CTGGCAAGGC CAGAGGTGTC GGCCTTTGTC GATAAATTTC AAGGTCTCAT GCTGGAAGAC
AAGGGGGCCA CGCTTGCGAT TCATTTTCGC CAATGCCCGG AACTTTCCGA AATCGTGCGC
ATTAGTGTCG AGGAATTAGC GTCAAGACAC GGTTTGGAAG CACAGGAAGG TAAAATGGTG
GTGGAGTTGA AGCCCTCTGC GTTCGACAAG GGTACCGCCA TCACCAACTT TCTCACCGAG
CCGCCTTTTT TCGGCCGGCG TCCGGTTTTC TTCGGGGATG ATCTGACCGA TGAAAAAGGG
TTCGAGGCCG TTAATCGGGT TGGAGGGATT TCGGTTAAAA TCGGGTCCTT CGAAACACCG
ACCAAAGCTC TCTATCGCCT TGCAGAGCCC TCCGCTCTTC GATGGCAAAT CGAGCAGATG
ATTTAA
|
|---|
| Protein sequence | MLEPTARIKD TTIKDTKPAA EPGLWKLMPC STSAFFFDVD GTLLDIKPHP ADVVADAGLK
SLLLQLAAKT KGALALVSGR MIEDIDRIFV PLVLPAAGLH GGQIRLSQTV EMLASRQNID
LARPEVSAFV DKFQGLMLED KGATLAIHFR QCPELSEIVR ISVEELASRH GLEAQEGKMV
VELKPSAFDK GTAITNFLTE PPFFGRRPVF FGDDLTDEKG FEAVNRVGGI SVKIGSFETP
TKALYRLAEP SALRWQIEQM I
|
|---|
| |