| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1955 |
|---|
| Symbol | |
|---|
| ID | 6198970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 2225851 |
|---|
| End bp | 2229561 |
|---|
| Gene Length | 3711 bp |
|---|
| Protein Length | 1236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641705943 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_001833067 |
|---|
| Protein GI | 182678921 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.226018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCC CTCGGCGCCA CACGCAATCG ACGGTCGATC CCTATGCCGG TATCGCCTTT
CGCGCGGCCA AGAGCGAGAT TCGCAATCCC GACGGCTCGG TGGTCTTTTC TCTCGAAGGC
ATTGAAGTGC CGGCGGCCTG GAGCCAGGTC GCGGCCGATG TCCTCGCCCA GAAATATTTC
CGCAAGGCCG GCGTTCCGGC GCGCCTGAAA CGCGTCGAGG AACATAGCGT CCCCTCTTTC
CTGTGGCGCA GCGTCCCCGA TGAGGAAGCT CTCGCGGCGC TGCCGCCCGC AGAGCGATTC
GTCTCTGAAA TTTCGGCCAA GCAGGTGTTC GACCGGCTGG CCGGCGCCTG GACCTATTGG
GGTTGGAAGG GCAGCTATTT CGATACCGAA GAGGACGCCC AGGCCTTTTA CGACGAATTG
CGCTTCATGC TGGCAAGCCA GATGGTGGCG CCGAATTCAC CGCAATGGTT CAACACCGGC
CTGTTCTGGG CCTATGGCAT CGATGGACCG AGCCAGGGCC ATTATTATGT CGATCCGTTC
GATGGCGAAC TGGTCCAGTC GCAATCGGCC TATGAACATC CGCAGCCGCA CGCCTGTTTC
ATCCAGTCGG TTCAGGATGA TCTCGTCAAT GAGGGCGGGA TCATGGACTT GTGGGTGCGG
GAAGCCCGCC TCTTCAAATA TGGCTCCGGC ACTGGCTCGA ATTTCTCGAA GCTGCGCGGC
GAGAATGAAA AACTGTCCGG AGGCGGCAAA TCCTCTGGCC TGATGTCCTT CCTGAAGATC
GGCGACCGGG CAGCGGGCGC GATCAAATCG GGCGGCACCA CGCGGCGGGC GGCCAAAATG
GTCGTCGTCG ATGCCGATCA TCCCGATATC GAGGATTATA TCGACTGGAA GATGCGCGAG
GAGCAAAAGG TCGCGGCCCT CGTCACCGGC TCCAAAACCT TGAAGAAGGC CCTGAAGGCC
ATCGTGCGCG CCTGCGTCAA TTGCGAGGGG CCGGGCGATG ATTGCTTCAA CCCGGAAAAG
AACCCGGCGT TGAAACGGGA GATCAAGCTC GCGCGCCGTG CCTTCGTGCC CGATGCCGCG
ATCAAGAAGG CGCTCCAGCT CGTTCGCCAG GGCGAGACCG ACATTGATGT CGAAGCCTTC
ACCACGGATT GGGATTCGGA AGCCTATCTC ACCGTCTCCG GCCAGAATTC CAATAATTCC
GTGCGCGTGA CCGATGATTT TTTACGCGCC GTGGAGCAAG ATGGCGATTG GAACCTGACA
CGGCGCCTCG ATGGCAAGCC GCATAAAACC CTGCCCGCGC GTGAGTTATG GGAGAAGATC
GGCCGTGCCG CCTGGGCCTC CGCCGATCCG GGCCTGCAAT TTCACACGAC GATCAATGAT
TGGCACACCT GCCCGGCCGA TGGCCCGATC GTCGCCTCGA ATCCATGCTC GGAATATATG
TTCCTCGACG ATACGGCCTG TAATCTTGCC TCGCTGAACC TGCTTCAGTT CCGCAATACG
CAGACCAAGA TTTTCGACGT CGAGGCTTAT GAACATGCCG TTCGGCTTTG GACGATCGTG
CTCGAAATCT CGGTGATGAT GGCGCAATTC CCGTCCCGGG AAATCGCTTT GCTCTCCTAT
GAATTCCGCA CGCTCGGCTT GGGTTTCGCC AATATCGGCG GGCTCTTGAT GTCGTCCGGC
ATTGCCTATG ATTCGGCGCA AGGCCGAGCG ATCTGCGGCG CGCTGTCAGC GATCATGACC
GGCATTGCCT ATGCGACTTC CGCCGAAATG GCCGGCCAGC TTGGCCCCTT CTCGGGCTAT
CAGCGCAACG CGACCGGCAT GCTACGGGTC ATGCGCAATC ATGCACGCGC GGCCCGCGGC
GAATCCACGG GTTACGAGAG CCTCGATATT CTCCCCGTCC CGCTCGATCA CGTAGCCCTC
GACGCAAACC CGGCGCTCGG CGCCCCTGCC CTGCGCCGTC ACGCGGTCAT GGCCTGGGAC
AAGGCTGTCG CCCTCGGCGA GCGGCACGGG TTCCGCAATG CCCAGGTCTC CGTTGTCGCG
CCGACTGGCA CGATCGGTCT CGTCATGGAT TGCGATACAA CCGGCATCGA GCCTGATTTC
GCCTTGGTGA AATTCAAGAA ACTCGCCGGC GGCGGCTATT TCAAGATCAT CAACCGCGCC
GTGCCGGAAG GTCTGCGCGC GCTGGGCTAT CCGGAATCCC AAATCGCCGA AATCGAGGCC
TATGCCGTCG GCCATGCCTC ACTCAGCAAT GCGCCGGGTA TCAATCACGC GAGCCTCACC
GCGCGCGGTT TCACGCCGGA GAAGATCGCC GACGTGGAAG CGGCGCTCGC CTCCGCCTTC
GATATCAAAT TCGTCTTCAA CAAATGGACG CTCGGCGCTG ATTTCCTGAC CGAGGTCCTG
AACATTCCGG CCGAAAAGCT GGATGAGCCG AATTTCGATC TGCTCAGCGC GCTGGGTTTC
TCGCGCCAGG AGATCGAGGC GGCGAATATC CATGTCTGCG GCGCGATGAC CATCGAAGGT
GCGCCCTATC TGAAACTTGA ACATTATGCG GTCTTCGATT GCGCCAGCAT CTGCGGGCGC
ACCGGCAAGC GCTTCCTCTC GGTCGAGAGC CATATCCGCA TGATGGCGGC CTCGCAGCCC
TTTATCTCCG GCGCGATCTC CAAGACGATC AACATGCCGA ACGAGGCGAC GATCGAGGAT
TGCAAGAACG CCTATCTCCT CTCCTGGCGC CTGGGCCTCA AGGCCAATGC GCTCTATCGC
GACGGGTCCA AACTGTCGCA ACCGTTGAAC AGCCAATTGC TGCAAGACGA CGAGGATGAA
ACGGAAGAAG CGCTCGACGC ATTGGTCGCC GCCCCCGCGC CCGTGCGCAG CACGATCGTT
GCCGAAAAGA TCGTCGAAAG GATCGTGGAG AAGACAGAAC GTATCCGCGA ACGTGAGCGT
CTGCCCGACC GGCGCAAGGG CTATACACAA AAGGCAGTGG TCGGTGGCCA TAAAGTGTAT
TTGCGCACCG GCGAATATGC GGACGGCCGG ATCGGCGAGA TCTTTATCGA CATGCACAAG
GAAGGCGCGG CCTTCCGTTC GTTGATGAAC AATTTCGCCA TCGCCATTTC GGTCGGCCTG
CAATATGGCG TGCCGCTGGA TGAATATGTC GATGCCTTCA CCTTCACCCG CTTCGAGCCG
GCGGGTCTGG TACAGGGCAA TGACGCCATC AAGAACGCTA CATCGATTCT CGATTATGTC
TTCCGCGAAT TGGCGATTTC CTATATCGGC CGCAATGATC TCGCCCATAT CGATCCGAGC
GAGATCGGCC CTGATGTGCT GGGCCAAGGC GAGAAGCAAA GCAGCCGGCC GCAGCAGACG
CCCGTTGTGC CGCCCGGCAC CGCGAAGCTT GTCTCGCATG GTTTCGTGCG GTCCAAGGCG
GACAAGCTGA TGCTGGTCCA AGGTGGCGTC GTTGCCTCCA CAACACAAGG CGCGACAGCC
CTTGCGGTTT CGACCACGAC CGCTCTCAAG GAAAGCCTCG TGGAGGAAGT CTCGGCGGAG
CTTGGCGCGC TCGACTGGGG TCCCGCCTCA ACCTTGGCTG GCAAACGCGC CGAAGCACGG
ATGAAGGGCT ATACGGGTGA TTCCTGCACG GAATGCGGCA ATTTCACCTT GGTGCGCAAC
GGCACGTGTT TGAAATGCGA TACCTGTGGG GCGACGACCG GCTGCTCATG A
|
|---|
| Protein sequence | MQIPRRHTQS TVDPYAGIAF RAAKSEIRNP DGSVVFSLEG IEVPAAWSQV AADVLAQKYF
RKAGVPARLK RVEEHSVPSF LWRSVPDEEA LAALPPAERF VSEISAKQVF DRLAGAWTYW
GWKGSYFDTE EDAQAFYDEL RFMLASQMVA PNSPQWFNTG LFWAYGIDGP SQGHYYVDPF
DGELVQSQSA YEHPQPHACF IQSVQDDLVN EGGIMDLWVR EARLFKYGSG TGSNFSKLRG
ENEKLSGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VVVDADHPDI EDYIDWKMRE
EQKVAALVTG SKTLKKALKA IVRACVNCEG PGDDCFNPEK NPALKREIKL ARRAFVPDAA
IKKALQLVRQ GETDIDVEAF TTDWDSEAYL TVSGQNSNNS VRVTDDFLRA VEQDGDWNLT
RRLDGKPHKT LPARELWEKI GRAAWASADP GLQFHTTIND WHTCPADGPI VASNPCSEYM
FLDDTACNLA SLNLLQFRNT QTKIFDVEAY EHAVRLWTIV LEISVMMAQF PSREIALLSY
EFRTLGLGFA NIGGLLMSSG IAYDSAQGRA ICGALSAIMT GIAYATSAEM AGQLGPFSGY
QRNATGMLRV MRNHARAARG ESTGYESLDI LPVPLDHVAL DANPALGAPA LRRHAVMAWD
KAVALGERHG FRNAQVSVVA PTGTIGLVMD CDTTGIEPDF ALVKFKKLAG GGYFKIINRA
VPEGLRALGY PESQIAEIEA YAVGHASLSN APGINHASLT ARGFTPEKIA DVEAALASAF
DIKFVFNKWT LGADFLTEVL NIPAEKLDEP NFDLLSALGF SRQEIEAANI HVCGAMTIEG
APYLKLEHYA VFDCASICGR TGKRFLSVES HIRMMAASQP FISGAISKTI NMPNEATIED
CKNAYLLSWR LGLKANALYR DGSKLSQPLN SQLLQDDEDE TEEALDALVA APAPVRSTIV
AEKIVERIVE KTERIRERER LPDRRKGYTQ KAVVGGHKVY LRTGEYADGR IGEIFIDMHK
EGAAFRSLMN NFAIAISVGL QYGVPLDEYV DAFTFTRFEP AGLVQGNDAI KNATSILDYV
FRELAISYIG RNDLAHIDPS EIGPDVLGQG EKQSSRPQQT PVVPPGTAKL VSHGFVRSKA
DKLMLVQGGV VASTTQGATA LAVSTTTALK ESLVEEVSAE LGALDWGPAS TLAGKRAEAR
MKGYTGDSCT ECGNFTLVRN GTCLKCDTCG ATTGCS
|
|---|
| |