| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1725 |
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| Symbol | |
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| ID | 6200870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010581 |
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| Strand | - |
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| Start bp | 1951672 |
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| End bp | 1953141 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641705716 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001832844 |
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| Protein GI | 182678698 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.736299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0102072 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTCACA TTGAACTTCG ACGCAAAGCA GCTCTTTCCA GTACACGGGG CAAGCGTGAT
CGCGGATCGC TGTCATCGCG CAAGCTGCCG CATTATATGG CTGGTCTCGG CTTGGCCATA
GGCCAGCTTC TCGCTTCTCC TTCCGCCATG GCGGAGAGTA TGTCGAGCGC CTTGGCCAAG
GCCTATACTA ACAACCCAGA TATGAATCAG GAACGTGCGT CGGTTCGTGC CGCTGATGAG
GCTTTGCCTC AGGCCACCGC TGGCTGGCGG CCGAATGTCA GTGCGTCCGG TTCTTACGGC
TATAATCACC TTTATTCACA TCTGCCGACC GCTGGTACGG TCTTCAGCGG CACTTACAAT
GTCGATGTTG GGCAGGTTGG TGTTACTGCG ACTCAGAATC TTTTCAACGG CAACCGGACG
CTCAATACGG TGCGTCAGGC AGAGTCGAAT ATTCTGGGCG CGCGCGAGGG GATGCGCAAT
ACAGAGCAGA ATATTCTGCA ATTTGGTGCC ACGGCTTACA TGAATGTGCT GCGCGATACG
GCCATTCTCA ATCTGCGGCG CAATAATATT ATTGTGCTCG AGGAGCAATT GCGCCAGACG
CGCGATCGTT TCAATGTCGG TGAAGTGACG AAAACCGATG TCGCGCAATC TGAATCGAGC
CTCGCCTCAG CGCGATCGGA TTATTTTGCA GCGCAGGCCA ATCTGCAGAC AAATATCGCC
AATTACCGTC AGATCATCGG CGTCGAGCCC AAAAAGCTGG AGCCCGCCGC GACGATCGAG
AAACTATTGC CCCGCAACGT GGACGCGGCC ATAGATCTTG CCATGGCCGA ACATCCGGCG
GTGCAGGCGG CCCTTCATTC TGTGGACGCG GCCCAGGCTC AGGTCAAGAT TGCCGAGGGC
GCGCTCTATC CAAAAGTCGA TTTTGTCGCT TCGACGCAGC GTGTTTTCAA TAATAACGGT
ATTCCGGGCT ATCCAAGCTT CAACGCTTCG GTCGTAGGCC AGGTCACTGT CCCGCTTTAC
GAAAATGGCG GCGCGACCTA TTCGCAGATT CGCCAAGCCA AGGAAAGACT CGGCCAAGCC
CAATTGCAGG CCGATTTGCA GCGGACACAA GTGAGGGCCT CTGTGGTCTC CAGTTGGAGC
CAGCTCGAGA CGGCGAAAGC GGTCATTCAA TCGTCTCTCG CCGCGGTCAA AGCAGCGGAA
ATCGCTCTGA ACGGCGTTCG GGAAGAGGCG AGGGTCGGTC AGCGCACGAC GCTTGATGTC
CTCAACGCAC AGCAATTCCT GCTTAACACC CGGGTGAGCC TCGTGACCGC TCAGCGTGAC
CGAGTCGTCG CATCCTACGT CGTCATGTCG ACCGTGGGTA AGTTGACTGC GGCCAATCTG
CATCTGTCCG TCGTAGAATA TGATCCGACT GTTCATTTCG AGCAGATCAA GGATAAATGG
ATCGGTGTCC GCACGCCTGA CGGACGCTGA
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| Protein sequence | MPHIELRRKA ALSSTRGKRD RGSLSSRKLP HYMAGLGLAI GQLLASPSAM AESMSSALAK
AYTNNPDMNQ ERASVRAADE ALPQATAGWR PNVSASGSYG YNHLYSHLPT AGTVFSGTYN
VDVGQVGVTA TQNLFNGNRT LNTVRQAESN ILGAREGMRN TEQNILQFGA TAYMNVLRDT
AILNLRRNNI IVLEEQLRQT RDRFNVGEVT KTDVAQSESS LASARSDYFA AQANLQTNIA
NYRQIIGVEP KKLEPAATIE KLLPRNVDAA IDLAMAEHPA VQAALHSVDA AQAQVKIAEG
ALYPKVDFVA STQRVFNNNG IPGYPSFNAS VVGQVTVPLY ENGGATYSQI RQAKERLGQA
QLQADLQRTQ VRASVVSSWS QLETAKAVIQ SSLAAVKAAE IALNGVREEA RVGQRTTLDV
LNAQQFLLNT RVSLVTAQRD RVVASYVVMS TVGKLTAANL HLSVVEYDPT VHFEQIKDKW
IGVRTPDGR
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