Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bind_1347 |
Symbol | rpoB |
ID | 6199230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
Kingdom | Bacteria |
Replicon accession | NC_010581 |
Strand | + |
Start bp | 1555240 |
End bp | 1559403 |
Gene Length | 4164 bp |
Protein Length | 1387 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641705343 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001832476 |
Protein GI | 182678330 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.039354 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAAT CTTTGGCGCA GACATTCACC GGCCGCAAGC GTGTCCGTAA ATTCTTCGGC CATATCCGCG AAGTTGCGGA AATGCCCAAT CTGATCGAGG TGCAGAAAGC CTCCTACGAT CAATTCCTGC TCGTCGACGA GCCGAAGGGC GGCCGACCGG ACGAAGGCTT GCAATCGGTT TTTAAATCGG TCTTTCCCAT TTCCGATTTC TCCGGCACGG CTTTGCTCGA ATTCGTCAAA TATGAATTCG AACTGCCGAA ATATGATGTC GATGAGTGCC GTCAGCGCGG CATGACCTTC GCCGCGCCGC TGAAGGTTAC CTTGCGCCTG ATCGTCTTTG ATGTCGACCC CGATACGGGA GCGAAATCGG TCAAGGACAT CAAGGAGCAG GATGTCTATA TGGGCGATAT GCCCCTAATG ACGATGAATG GTACGTTCAT TGTCAATGGG ACGGAGCGCG TGATCGTCTC GCAGATGCAT CGTTCGCCGG GCGTTTTCTT CGATCACGAT AAAGGCAAAA GCCATTCTTC CGGCAAACTC CTGTTTGCCG CCCGCATCAT CCCTTATCGC GGTTCCTGGC TCGATATCGA ATTCGATGCC AAGGACATCG TCTATGCGCG TATCGATCGC CGCCGCAAAA TTCCGGCGAC ATCGGTGCTT TATGCGCTGG GCATGGATGG TGAGGAAATT CTCTCCACTT TCTACAAGAC CATCGTCTAT ACGCGCGATA AGGATGGCTG GCGCATTCCC TTCGACGCAG AGCGCATGAA GGGCATGAAG GCGGCGATCG ATCTGATCGA TGCGGAAAGC GGCGAGGTCG TGCTGGAGGC GGGCAAGAAG CTCACCGTGC GCACGGCGCG GCAATTGGCG GAGCGCGGCC TCAAATTCAT CAAGGCACAG GACGAGGATC TGCACGGTCA ATATATCGCC AGCGATCTCT ATAATCCGCA GACGGGTGAG ATCTTCGCCG AGGCCGGCGA GGAGATCAGT GCGAAAACAC TGACGACCCT TGTCGATTCC GGTTTCGAAG AGATCCCGGT TCTCGATATC GACCATATCA ATATCGGACC CTATATCCGC AACACCTTGG CGGTCGACAA GAACAATTCG CGCGAAGACG CTTTGTTCGA CATCTATCGC GTGATGCGTC CTGGCGAGCC GCCGACGCTC GAGACTGCGG AAGCGATGTT TCATTCCCTG TTCTTCGATC CCGAGCGCTA TGATCTCTCG GCGGTCGGGC GCGTGAAGAT GAACATGCGC ATGGATCTCG ACGCGGCCGA TACGGTGCGT ATTCTCCGTA AAGCCGATAT TGTTGCCGTC ATGCGCGCGC TCGTGGATCT GCGCGATGGA CGTGGCGAAA TCGATGATAT CGACCATCTC GGCAATCGCC GAGTCCGCTC GGTCGGCGAA TTGATGGAGA ACCAATATCG CCTCGGCCTG CTGCGCATGG AACGGGCCAT CAAGGAACGG ATGTCCTCGG TCGATATCGA CACGGTCATG CCGCAGGATC TGATCAATGC GAAACCGGCG GCGGCCTCCG TCCGCGAATT CTTCGGTTCC TCGCAATTGT CGCAGTTCAT GGACCAGACC AATCCTCTGT CCGAGATCAC GCATAAACGG CGCCTCTCGG CCTTGGGACC GGGCGGTCTG ACGCGTGAGC GCGCGGGCTT CGAAGTGCGC GACGTGCATC CGACCCATTA TGGCCGTATC TGTCCGATCG AGACGCCGGA AGGCCCGAAT ATCGGTCTTA TCAACTCGCT CGCGACCTTC GCGCGTGTCA ATAAATACGG GTTTATCGAG GCGCCTTATC GCCGGGTCAG GGATAATCAC GTCACCGATG ACGTCGTCTA TCTTTCGGCG ATGGAAGAGA GCAAATATTA CGTCGCCCAG GCCGATGCCA AGGTTGATGC GGATCGTGGC CTCGTCGAGG ATCTGATCGT CTGCCGTCAT GCCGGCGATG TGATCATGGT ACCGCGCGAG CGTGTCGACT TCATGGATGT GTCGCCGAAA CAGCTCGTCT CGGTCGCCGC GGCCTTGATC CCGTTCCTTG AGAACGATGA CGCCAACCGC GCGCTGATGG GCTCGAACAT GCAGCGCCAG GCTGTGCCTC TGGTGAAAGC CGATGCGCCG CTGGTTGGGA CCGGTATGGA AGCGGTTGTG GCACGCGATT CCGGGGCGGC CATTGCCGCG CGGCGCACGG GCTATATCGA CCAGATCGAT GCGACCCGTA TCGTCATTCG CGCCACGGAA GAGACCGATG CCGGCAAGCC GGGTGTCGAT ATCTACCGGC TGATGAAGTT CCAGCGTTCG AACCAATCGA CCTGCGTCAA CCAGAAGCCT TTGGTCCGCG TCGGCGATTT CGTGCGCAAG GGCGATATTA TCGCCGATGG TCCCTCGACC GATCTGGGTG ATCTGGCGCT CGGCCGCAAT GTGCTCGTCG CCTTCATGCC CTGGAACGGA TATAATTTCG AGGACTCGAT CCTGCTCAAC GAGCGGATCG TCAAGGATGA CGTGTTCACT TCGATCCATA TTGATGAATT CGAAGTGATG GCACGCGATA CGAAGCTCGG CCCGGAGGAA ATCACTCGCG ATATTCCGAA TGTTTCGGAA GAGGCTTTGA AGAATCTCGA CGAGGCCGGC ATCGTCTATA TCGGTGCCGA GGTTCAGGCG GGCGATATTC TCGTCGGCAA GATCACGCCG AAGGGCGAAA GCCCGATGAC GCCGGAAGAA AAGCTGCTGC GCGCCATTTT CGGTGAGAAG GCCTCTGACG TTCGCGACAC GTCCCTGCGT GTGCCTCCGG GCGTGCAAGG GACGATCGTC GAAGTTCGTG TCTTCAACAG GCACGGCGTC GACAAGGACG AACGAGCTCA AGCGATCGAG CGCGAGGAAA TTGAGCGTCT CGCGAAGGAC CGTGACGACG AACTCGCGAT CCTCGACCGC AACGTCTATA CGCGCCTCAT TGATCTTCTG GATGGCAAGA AGGCGATTGC CGGCCCCAAG GGCTTCAAGA AGGAGACGGT GCTGTCGCGC TCGGTGATCG AGGAATATCC TCGTTCTCAA TGGTGGACGT TCGCCATCGA AAGCGATCAG CTCATGGCCG AGATCGAAGC CATGCGCAAG CAATATGACG AGGCCAAAAA AGGACTGGAA AACCGCTTTC TCGACAAGGT CGAAAAGCTC CAGCGCGGTG ACGAACTGCC GCCTGGCGTT ATGAAAATGG TCAAGGTCTT TGTCGCCATC AAGCGCAAGA TCCAGCCCGG CGACAAAATG GCGGGCCGTC ATGGCAACAA GGGTGTCGTC TCCAAGATCG TGCCGCAGGA GGACATGCCC TTCCTGGCCG ACGGTCAGCC GGTCGATATC GTGCTCAATC CGCTCGGCGT GCCTTCGCGC ATGAATGTCG GGCAGATTCT CGAGACGCAT CTCGGCTGGG CTTGCGCAGG GCTTGGCAAG CAGGTGAGCG AGGCGGTCAA TGCCTATCTC AGGCAGCAGG ATACGCAGCC GATCCGCGAC AAGCTGATCG AGATCTATGG TGAAGGTCAA CGGGAGCAGA TCAGCGCTCT CGATGAAGAG ACATTGGTCG AGGTCGGTGA AAATCTGCGC CGCGGTGTTC CTATTGCCAC GCCTGTGTTC GATGGCGCGC GTGAGAAGGA TATCGTTGCC ATGCTCGAGG AGGCGGGGCT CGATCATTCC GGTCAGGTCA CGCTTTACGA TGGCCGATCT GGCGAGGCCT TCGACCGTAA GGTGACGGTC GGCTACATTT ATATGTTGAA GCTGCATCAT CTCGTCGATG ACAAGATCCA TGCGCGTTCG ATCGGTCCGT ACAGCCTCGT GACGCAACAG CCATTGGGCG GCAAAGCGCA GTTCGGTGGC CAGCGCTTCG GCGAAATGGA AGTCTGGGCG CTCGAAGCTT ATGGTGCGGC CTATACGCTG CAGGAAATGC TGACCGTGAA GTCGGACGAC GTCGCGGGTC GTACCAAGGT CTATGAATCG ATCGTGCGCG GTGATGATGC TTTCGAATCC GGTATTCCGG AAAGCTTCAA CGTGCTGGTC AAGGAAATGC GTTCGCTCGG CCTCAATGTC GAATTGAATA TGGCTCCAAA ATTGACCGAT CAGCAGCAAC AACAGCCGTC GCCGGAACAA CCGCCGGCTG AAGCCGCCGA ATAA
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Protein sequence | MAQSLAQTFT GRKRVRKFFG HIREVAEMPN LIEVQKASYD QFLLVDEPKG GRPDEGLQSV FKSVFPISDF SGTALLEFVK YEFELPKYDV DECRQRGMTF AAPLKVTLRL IVFDVDPDTG AKSVKDIKEQ DVYMGDMPLM TMNGTFIVNG TERVIVSQMH RSPGVFFDHD KGKSHSSGKL LFAARIIPYR GSWLDIEFDA KDIVYARIDR RRKIPATSVL YALGMDGEEI LSTFYKTIVY TRDKDGWRIP FDAERMKGMK AAIDLIDAES GEVVLEAGKK LTVRTARQLA ERGLKFIKAQ DEDLHGQYIA SDLYNPQTGE IFAEAGEEIS AKTLTTLVDS GFEEIPVLDI DHINIGPYIR NTLAVDKNNS REDALFDIYR VMRPGEPPTL ETAEAMFHSL FFDPERYDLS AVGRVKMNMR MDLDAADTVR ILRKADIVAV MRALVDLRDG RGEIDDIDHL GNRRVRSVGE LMENQYRLGL LRMERAIKER MSSVDIDTVM PQDLINAKPA AASVREFFGS SQLSQFMDQT NPLSEITHKR RLSALGPGGL TRERAGFEVR DVHPTHYGRI CPIETPEGPN IGLINSLATF ARVNKYGFIE APYRRVRDNH VTDDVVYLSA MEESKYYVAQ ADAKVDADRG LVEDLIVCRH AGDVIMVPRE RVDFMDVSPK QLVSVAAALI PFLENDDANR ALMGSNMQRQ AVPLVKADAP LVGTGMEAVV ARDSGAAIAA RRTGYIDQID ATRIVIRATE ETDAGKPGVD IYRLMKFQRS NQSTCVNQKP LVRVGDFVRK GDIIADGPST DLGDLALGRN VLVAFMPWNG YNFEDSILLN ERIVKDDVFT SIHIDEFEVM ARDTKLGPEE ITRDIPNVSE EALKNLDEAG IVYIGAEVQA GDILVGKITP KGESPMTPEE KLLRAIFGEK ASDVRDTSLR VPPGVQGTIV EVRVFNRHGV DKDERAQAIE REEIERLAKD RDDELAILDR NVYTRLIDLL DGKKAIAGPK GFKKETVLSR SVIEEYPRSQ WWTFAIESDQ LMAEIEAMRK QYDEAKKGLE NRFLDKVEKL QRGDELPPGV MKMVKVFVAI KRKIQPGDKM AGRHGNKGVV SKIVPQEDMP FLADGQPVDI VLNPLGVPSR MNVGQILETH LGWACAGLGK QVSEAVNAYL RQQDTQPIRD KLIEIYGEGQ REQISALDEE TLVEVGENLR RGVPIATPVF DGAREKDIVA MLEEAGLDHS GQVTLYDGRS GEAFDRKVTV GYIYMLKLHH LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VAGRTKVYES IVRGDDAFES GIPESFNVLV KEMRSLGLNV ELNMAPKLTD QQQQQPSPEQ PPAEAAE
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