| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1001 |
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| Symbol | |
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| ID | 6200001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010581 |
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| Strand | + |
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| Start bp | 1146947 |
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| End bp | 1148542 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641704992 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001832133 |
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| Protein GI | 182677987 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.541747 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGTT TCGCGACCTG GAAAATCGCC TCGATCATCG GCATGACGTT GTTCGCTTTT
CTCGTCATCC TGCCGAGCCT CTTCTCTCCA GAGCAACGCG AGGCCGTGAG CGCGCATCTG
CCGCATTGGC TGCCCTTGCG CGCTATTGTT CTGGGTCTCG ATCTGCAAGG CGGCTCGCAT
GTCCTGCTCG AGGTCGATGC GCCCTCCGTG CTGAAAACCC AGGTCGATAG CCTGCGCGAT
GATTTGCGGC GGATCTTGCG CGAGGAGAAG ATCGGCATTT CGGGTGGTAT CGGCCTCTTG
CCGCGTGGCG TCCAATTCCG CCTCGCTGAT CCAGCCGAAC GCGCCAAGCT TATGCCGAAG
CTCCAGCAAT TGGCGGGTTC CAGCGGCGTG AACCTGCTGG GTGGCAATCG CGCGGCCTCT
TTCGACATTG TCGAAAAGGA CGATGGCCTG ATCCAGGTTG TTGTGACCGA TGCCGCCATC
AACGACCGCG TGCGGCGCGC GGTTGATCAA TCAATCGAAG TTTTACGGCG CCGCGTCGAT
GCGCTCGGAA CGACAGAGCC GAACATTCAG CGCCAGGGCA ATGACCGCAT CCTTGTCGAA
GTGCCGGGTC TGCAGGATAC ATCGAAGCTC AAGGAAATTC TCGGCACGAC AGCGAAGCTC
GAATTCCGCC TTGTCGCGGA ACCTGGCACC GATCCGAACG AGATCGAGCA ACTCGACCAG
GTCGAGAGCA ACGGCAAGCT GCCGATCGAG AAACGGGTGA TGGTGCAGGG CGAGGACTTG
ACCGATGCCC AGCCGGGGTT CGACAGCCGC ACGCAGGAGC CGGTGGTCAA TTTCCGCTTT
AATATTCGCG GTGGTCAGAA ATTTGGTGAA GTGACCGCCG CTAATGTCGG GCGTCCTTTC
GCGATTGTGC TCGATGGCAA AGTGATTTCC GCGCCGCGTA TCAAGGGCCC GATCACCGGC
GGCCAGGGCG AGATTTCCGG CAGTTTCACA GTTGAGCAGG CGAATAATCT CGCCATTCTC
CTGCGCGCCG GTGCGTTGCC CGCCAAATTG AGCATTGTGG AGGAGCGCAC GGTCGGGCCG
GGCCTGGGGC AGGATTCGAT CAATGCCGGT AAACGGGCGG CCTATGTCGG TGCCGCGCTC
GTCGCACTTT ATATGCTCGT GACCTACGGC ATTTTCGGCG TCTTCGCCAA TCTCGCCCTT
CTGGTCCATA TCGCCTTCAT TTTTGCGGGC CTGGTACTCC TCGGCGCCAC CCTGACCCTG
CCGGGCATTG CCGGCATCGT TCTTACCATC GGCATGGCGG TCGATTCCAA CGTCTTGATC
TATGAACGCA TCCGTGAGGA AGCACATGCA GGGCGTTCGA TCGTCTCGGC GCTCGATGCC
GGCTTCAACC GCGCCTTCGC GACGATTGTC GATTCCAATG TCACGATGTT TGTCGCCGCG
GCCATTCTCT ATTTCCTCGG CTCCGGGCCG GTACGCGGTT TCGCCGTTTC GCTGGCGCTC
GGCATTTTGA CGACCATCGT CACCGCCGTG ACCATGACCC GCATGATGAT TACTCTCTGG
TATCGCTCCA AGCGCCCGAC CCAATTGCCG ATCTAA
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| Protein sequence | MLRFATWKIA SIIGMTLFAF LVILPSLFSP EQREAVSAHL PHWLPLRAIV LGLDLQGGSH
VLLEVDAPSV LKTQVDSLRD DLRRILREEK IGISGGIGLL PRGVQFRLAD PAERAKLMPK
LQQLAGSSGV NLLGGNRAAS FDIVEKDDGL IQVVVTDAAI NDRVRRAVDQ SIEVLRRRVD
ALGTTEPNIQ RQGNDRILVE VPGLQDTSKL KEILGTTAKL EFRLVAEPGT DPNEIEQLDQ
VESNGKLPIE KRVMVQGEDL TDAQPGFDSR TQEPVVNFRF NIRGGQKFGE VTAANVGRPF
AIVLDGKVIS APRIKGPITG GQGEISGSFT VEQANNLAIL LRAGALPAKL SIVEERTVGP
GLGQDSINAG KRAAYVGAAL VALYMLVTYG IFGVFANLAL LVHIAFIFAG LVLLGATLTL
PGIAGIVLTI GMAVDSNVLI YERIREEAHA GRSIVSALDA GFNRAFATIV DSNVTMFVAA
AILYFLGSGP VRGFAVSLAL GILTTIVTAV TMTRMMITLW YRSKRPTQLP I
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