| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_0901 |
|---|
| Symbol | |
|---|
| ID | 6201305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 1027567 |
|---|
| End bp | 1030755 |
|---|
| Gene Length | 3189 bp |
|---|
| Protein Length | 1062 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641704898 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001832039 |
|---|
| Protein GI | 182677893 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.629732 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.563916 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTGT CCCATTTCTT CATCGACCGC CCGATTTTCG CGACGGTTCT GAGCCTGTTC
ATCACCATCA TCGGGCTTGG CGCCTATTTC ACTTTGCCCG TCGCTGAATA TCCCGAGATC
GTGCCGCCGA CGGTGCAGAT CACCGCGACC TATCCCGGCG CCTCGGCGGA TGTTGTCAGC
CGCACGGTCG CGACACCGCT CGAACAACAG ATCAACGGCG TCGAAAACAT GCTCTATATG
AGCAGCCAGG CGACCGGCGA CGGCAAGCTC GTCATCACCA TCACCTTCAA GATCGGCACC
AATCTCGACA CCGCCCAGGT CCTGACCCAG AACCGTGTCT CCATCGCTCT GCCGCGCCTG
CCGCAAGAGG TGCAAAGGCT CGGCGTGACA GTGCGCAAAA CCACCCCGGA CATTCTGATC
CTCGTCCATC TCTTTTCTCC GGATGGCTCG CGTGATCAGC TCTATATGTC GAACTATGCC
ACGCTCCATG TTCGCGACGT GCTGTCGCGA CTTGAAGGCA TTGGCGATGT GCAAGTGTTC
GGCAGCCGCG ATTATTCGAT GCGGATCTGG CTCGATCCCG ACAAGGTCGC GGCCTATGGC
CTGACCGCCG GCGAGGTCGT CTCCGCCTTG CAGGCACAGA ATGTCCAGGT CTCAGCCGGC
ATTCTCAACC AACCGCCGCT GCCCTCCGCG GCCGCGTTCC AATTGAATGT GCAGACGCTG
GGCCGGCTGA CAAAGCCGGA GGAATTCGCC GAGATCATCA TCAAATCGGA TGAACAAGGC
CGTTTGACAC GTGTGAAGGA CGTGGGCCGG GTCGAGGTCG GCGCCCAGGA TTACGGCGCC
AATGGCTTCC TCGACGGACG CAATGCCGTG CCGATTCCTG TCTATCAGCA GCCCGGTTCC
AACGCGCTGG AAACCGCGAA CCGCGTCCGC GCCACCATGG ATGAACTTGC TCGCGATTTC
CCGCCCGGGC TCGCTTACGA TGTCGTCTAT GATCCGACAC GCTTCATCGA ACAATCCGTG
CATGAAGTTC TGCATACGAT CATCGAGGCT ATCGCGCTTG TTGTCGTGGT CGTCATTCTC
TTCCTGCAAA CCTGGCGGGC CTCGATCATT CCGATCGTCG CCATTCCGAT TTCCTTGATC
GGCACTTTCG CCATTCTCGC CGCACTCGGT TTCTCGCTGA ACAATCTGTC CTTGTTCGGT
CTCGTCCTCG CGGTTGGCAT CGTGGTCGAT GATGCCATTG TCGTGGTCGA AAATGTCGAG
CGCAATTTGC AAAAGGGGCT ATCCCCGCGC GAGGCCGCGC ACCTGACCAT GGATGAAGTC
GGTGGCGCTT TGATCGCCAT CGCCTTGACG CTCTGCGCCG TGTTCATTCC CTCGGCCTTC
ATTTCCGGCA TCAGCGGCGC CTTCTTCCGG CAATTCGCTG TGACCATTGC GGCCTCGACA
ATCATCTCCT GCCTCGTCTC GCTGACCTTG AGCCCGGCGC TTTGCGCGCT TCTCCTGCGT
CCGCATACAC AAGAGCATGA CCATCATGCC AAGGGTTTTG GACCCGCGCG GCTGATTCAG
GGCTTTTTCA ACCTTTTCAA TCGCGGCTTC GACTGGCTTT CCAACACTTA TGGCCGCGCG
ACATCACGCT TGATCCGCCT CTCGGCCATG GTGCTGATCG TCTATGCCGG CTTGATCGGC
CTCACCGGCT GGCAGTTCAG CCGCGCGCCG ACCGGCTTCG TGCCGGAGCA GGATCAAGGC
TATCTCATCA ATATTCTGCA ACTGCCGCCA GGCGCTTCCC TCGATCGCAC AGAAGCGGTT
TTGCGCCAGG CGACTGACCT GATCCTTGCA ACCCCCGGCG TCGCCCATGT CGTGCCCTTC
TCGGCGCTCG ATGCGACGAC CTTCACCAAT GCGTCCAATG CCGGCACCAT TTTCGCCGTG
CTCGATCCTT TCGAGGAGCG GCACGCCAAG GGGCAGACGG GCGTCGCCAT TCTCGCGGAA
CTGCGCCAGA AACTGGCCGC GGTCCAGGAC GCCTTCATCC TCTCGATCGC GCCGCCGCCT
GTCCAGGGCA TCGGCACCGC CGGCGGCTTC AAGCTCATGG TGCAGGATCG CCAGGGCCTG
GGTTCGGCGG CGCTCGAGGC CGCCGCCCAG GATCTGGTCG CCGCCGCCAA TCAATCGCCT
GCCTTTGCCG GCGTCTTCAC TTTGTTCAAT ACGCGCACAC CGTCTGTCTA TGCCGATATC
GATCGCGCCA AGGCGCAAAA GGTCGGCGTC ACGCCGGAGC GGGTTTTCGA GGCGCTGCAA
GTCTATCTGG GCTCTGCCTA TATCAATGAT TTCAATTATC TCGGCCGTAC CTACGAAGTC
ATCGCCCAGG CCGATGGACG CTTCCGCCGC GATATCGACG ATATTGCCCG GCTGCGCACC
CGCAATGCCC AAGGGGCCAT GGTGCCGATT GGCACGGTCG CCACATTCAA GCCGCAGACA
GCCCCCTATC GCGTGCCGCG TTACAATCTG TTCCCCAATG CGGAAATCAT GGGCGCGGCG
GCTCCAGGCG TTTCCACCGG CACCGCTCTC GCAACCATAG AGCGTCTGGC ACAAGAGCAT
TTGCCTGCAG GCTTTGGCTA TGAATGGACG GAAATCGCCT ATCAGCAGAA AGTGGCTGGC
ACTTCGACCT TGCTGATTTT CGGCGCCTCG ATCCTGTTCG TCTTTCTCGT GCTTGCTGCG
CAATATGAAA GCTGGAAGCT GCCGCTCTCG GTCATTCTCA TCGTGCCCAT GTGTCTGCTT
GCCGCCGTCA CGGGATTGAT GATGCGCGGC ATGGCGATCG ATATTCTGGC GCAGATCGGC
TTTGTCGTTC TCGTTGGATT GGCCGCGAAA AACGCCATTC TGATCGTCGA ATTCGCCAAA
CAGGCGGAAG ATGATGGCGC CACAACAAAA GACGCCGCGG TTCAGGCGGC GCGGACACGA
TTACGGCCGA TTCTGATGAC CTCGCTCGCC TTCATCCTCG GTGTGTTGCC CCTGGTGATG
GCGAGCGGCG CCGGCGCGGA AATGCGCCAA TCGCTCGGCA CCGCCGTCTT CTTCGGCATG
TTGGGCGTGA CCTTCTTCGG CCTTATCTTC ACGCCCATCT TCTATGTCGC GGCGCGCCGG
CTCTCCTCTC CCTTCGGGCA CGGCAAAGCG CGGCAGGAGG CCGTGGCCAG CGCCAGCGCA
GCGGAGTAA
|
|---|
| Protein sequence | MRLSHFFIDR PIFATVLSLF ITIIGLGAYF TLPVAEYPEI VPPTVQITAT YPGASADVVS
RTVATPLEQQ INGVENMLYM SSQATGDGKL VITITFKIGT NLDTAQVLTQ NRVSIALPRL
PQEVQRLGVT VRKTTPDILI LVHLFSPDGS RDQLYMSNYA TLHVRDVLSR LEGIGDVQVF
GSRDYSMRIW LDPDKVAAYG LTAGEVVSAL QAQNVQVSAG ILNQPPLPSA AAFQLNVQTL
GRLTKPEEFA EIIIKSDEQG RLTRVKDVGR VEVGAQDYGA NGFLDGRNAV PIPVYQQPGS
NALETANRVR ATMDELARDF PPGLAYDVVY DPTRFIEQSV HEVLHTIIEA IALVVVVVIL
FLQTWRASII PIVAIPISLI GTFAILAALG FSLNNLSLFG LVLAVGIVVD DAIVVVENVE
RNLQKGLSPR EAAHLTMDEV GGALIAIALT LCAVFIPSAF ISGISGAFFR QFAVTIAAST
IISCLVSLTL SPALCALLLR PHTQEHDHHA KGFGPARLIQ GFFNLFNRGF DWLSNTYGRA
TSRLIRLSAM VLIVYAGLIG LTGWQFSRAP TGFVPEQDQG YLINILQLPP GASLDRTEAV
LRQATDLILA TPGVAHVVPF SALDATTFTN ASNAGTIFAV LDPFEERHAK GQTGVAILAE
LRQKLAAVQD AFILSIAPPP VQGIGTAGGF KLMVQDRQGL GSAALEAAAQ DLVAAANQSP
AFAGVFTLFN TRTPSVYADI DRAKAQKVGV TPERVFEALQ VYLGSAYIND FNYLGRTYEV
IAQADGRFRR DIDDIARLRT RNAQGAMVPI GTVATFKPQT APYRVPRYNL FPNAEIMGAA
APGVSTGTAL ATIERLAQEH LPAGFGYEWT EIAYQQKVAG TSTLLIFGAS ILFVFLVLAA
QYESWKLPLS VILIVPMCLL AAVTGLMMRG MAIDILAQIG FVVLVGLAAK NAILIVEFAK
QAEDDGATTK DAAVQAARTR LRPILMTSLA FILGVLPLVM ASGAGAEMRQ SLGTAVFFGM
LGVTFFGLIF TPIFYVAARR LSSPFGHGKA RQEAVASASA AE
|
|---|
| |