Gene XfasM23_2146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXfasM23_2146 
Symbol 
ID6203172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXylella fastidiosa M23 
KingdomBacteria 
Replicon accessionNC_010577 
Strand
Start bp2423418 
End bp2424779 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content51% 
IMG OID641703660 
Productmultidrug efflux protein 
Protein accessionYP_001830816 
Protein GI182682656 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGTCT CGTTTGTGAT ATCCCGCTTT GGTTCCGAAG TTCGTCCTAC TCTTTTGCTT 
GCGCTGCCGC TCGTTTTGGG TCACGTTTCC ACTGGTCTGA TCGGCTTTGT ACTTAACGTT
ATTGCTGGTC ATCACTCTAC CGTCACTCTA GCGGCATCGA CTATCGGCAC TGCATTGCTT
TGGTTGCCGA TGTTGGTACC CATGGGTACG TTGATTTCGT TAACGGTGTT GGTATCGCAA
TTGCATGGTG CTGAGCGTGA ACGGGACATT GGGCCTTTGT TCCGCCAAGC GTTGTGGCTG
GCCATGCTGT TGGGGTTGGT GATGTTCACT TTCCTCAGTG TGGTGCCAGC CTTGTTGCCG
CTCTTTGGTA TCGTCCCGGA TATCGTTCCG GGTGCTGCTA AGTTTTTGCA TGTAGTGCGT
TGGGGGAGTT TGGCATTCCC TCTTTACTTC TGTATGCGTT ATTTCTGTGA GGGAATGCAC
TGTACTTTTC CAACGATGCT TCTGGGTTTT GGTGGGTTGC TAGTGCTGGT GCCATTGAGT
TATGCGTTGA CATACGGTCG TTTTGGTTTT GCCGAGTATG GTGTTGAGGG CTTGGGGATC
GCAACAGTGA CGGTCATGTG GCTACAGGCG GTTGTATTTG CGTTGTACTT GTGGAGATCA
CGTCGCTTCG CCCATCTGCA GCTATTTGCG CATCTGGAAT TGCCGTGCTG GGCACGTATC
CGTGATCTGT TGAATATAGG ATTACCCATC GGCATTAGTA TTTTGATGGA GGGCGGATTA
TTTATTGTCA CCACGTTGCT GATTGGTCGG TTTGGTACTG ATGAAATTGC CGCGCATCAA
ATTGCCCTAA GTGTTGCTCA ATTGTGCTTC ATGATCCCGA TGGGTGTAGC TGAGGCAACC
ACGGTGCGAA TCGGCCATGC TGTGGGTCGT TGCGATCTTT TGGTGATGCG CCGTGTCGCT
TGGGCTGGTT ATGCAATCGT GATCGGGACG CAGACACTCT CAGCAAGTGT GCTTTTGCTC
GGATATGACG TGATTGTAGC CGCTTATACG GATGATTTGG TGGTGGCGTC TCTGGCTTCT
AAATTACTGT TGTTTGCGGC TATATTCCAG TTCCCGGATG GTCTCCAGAT GCTTTCGTCC
GGTGTATTAC GTGGGATGAA GGACACCCGG GTGCCGATGC TGCTGGCGAT GATCTCGTAT
TGGGGTTTAG GTATGCCGCT TGGTCTTGGC CTTGGTTTTG CCTTGGAATG GAATTCTCGC
GGTATGTGGA TCGGCTTAAT CATTGGCTTG ACTGCAGCTG CATTGTTGCT TGGTTGGCGA
TTTCGTGTGG TTAGCGAGCG CATGTTTGCC GGTATTCCCT AA
 
Protein sequence
MAVSFVISRF GSEVRPTLLL ALPLVLGHVS TGLIGFVLNV IAGHHSTVTL AASTIGTALL 
WLPMLVPMGT LISLTVLVSQ LHGAERERDI GPLFRQALWL AMLLGLVMFT FLSVVPALLP
LFGIVPDIVP GAAKFLHVVR WGSLAFPLYF CMRYFCEGMH CTFPTMLLGF GGLLVLVPLS
YALTYGRFGF AEYGVEGLGI ATVTVMWLQA VVFALYLWRS RRFAHLQLFA HLELPCWARI
RDLLNIGLPI GISILMEGGL FIVTTLLIGR FGTDEIAAHQ IALSVAQLCF MIPMGVAEAT
TVRIGHAVGR CDLLVMRRVA WAGYAIVIGT QTLSASVLLL GYDVIVAAYT DDLVVASLAS
KLLLFAAIFQ FPDGLQMLSS GVLRGMKDTR VPMLLAMISY WGLGMPLGLG LGFALEWNSR
GMWIGLIIGL TAAALLLGWR FRVVSERMFA GIP