Gene XfasM23_1609 details

Gene Information

• Locus tag: XfasM23_1609
• ID: 6203601
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M23
• Kingdom: Bacteria
• Replicon accession: NC_010577
• Strand: +
• Start bp: 1784206
• End bp: 1784868
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641703121
• Product: rhomboid family protein
• Protein accession: YP_001830291
• Protein GI: 182682131
• COG category: [R] General function prediction only
• COG ID: [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCCGA AACTGCCTAC CGTCACCAAA GGTCTACTAC TCACCAACGT CGTTATTTTC 
CTATTTCAGA TGATGTTGGG TGAGAACACC TTCGCAACAC TGATGCTGTG GCCGCTAGGC 
GGTAACAGCT TCGAAACATT GATATCAGGT GCCAGCTTCA TGCCTTGGCA GTTGCTGACC 
TACGGATTTC TGCATGAGGG TTTTCAACAC CTATTCTTCA ATATGCTCGC AGTCTTCATG 
TTCGGTGCGG CACTGGAGCA TACCTGGGGT GAGAAGCGCT TTTTGACGTA TTACCTGGTG 
TGTGTCGCCG GTGCTGGCGT ATGCCAGCTA TTGGTCAGTT GGCTGCTGAG CAGTGGTACG 
CCAGTGCTTG GTTCGTCCGG TGGCGTGTTC GGTTTATTGA TGGCCTACGG GATGCTATTT 
CCCGATGAAC GTATCTTGCT GGTTTTTCCA CCGATTCCTA TGAAAGCAAG AACCTTTGTG 
ATTTTATACG GTGTCATCGA ATTGCTCATG GGCATCACTG GCATACAACC CAACGTCGCA 
CATTTCACAC ATCTAGGTGG CATGCTGTTT GGCTGGTTAC TGATCCGCTA CTGGCGTGGG 
CAACCCCCGT TCGGTGGTAG CGGACGTAAA CCCAAGCCAC CTTACATCCG TATGGTGCCC 
TGA 

 

Protein sequence

MFPKLPTVTK GLLLTNVVIF LFQMMLGENT FATLMLWPLG GNSFETLISG ASFMPWQLLT 
YGFLHEGFQH LFFNMLAVFM FGAALEHTWG EKRFLTYYLV CVAGAGVCQL LVSWLLSSGT 
PVLGSSGGVF GLLMAYGMLF PDERILLVFP PIPMKARTFV ILYGVIELLM GITGIQPNVA 
HFTHLGGMLF GWLLIRYWRG QPPFGGSGRK PKPPYIRMVP