Gene XfasM23_1375 details

Gene Information

• Locus tag: XfasM23_1375
• Symbol: rnc
• ID: 6202289
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M23
• Kingdom: Bacteria
• Replicon accession: NC_010577
• Strand: +
• Start bp: 1522437
• End bp: 1523120
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641702894
• Product: ribonuclease III
• Protein accession: YP_001830067
• Protein GI: 182681907
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATATCAA GTAAGGCCAG CGATTACCAA CAGCGGATCG GCTATGTGTT TACCGATCCA 
TCTCTGCTGC TGCAAGCACT GCGTCACCGT AGTGCCGGCA CCCCGCACAA TGAGCGCCTG 
GAGTTCCTCG GCGACAGCGT GGTTAACTTG CTGATCGCCG AAGCGCTTTT CCAACGCTGG 
CCACGTGCTG ACGAAGGAGC ATTAACCCGT GCCCGTTCCG AACTGGTGCG TGAAACATCT 
CTGGCCTCGA TTGCACGCAC CATGCAATTA GGGGAGCAAC TCATCCTTGG ACCAGGTGAA 
CTCAAATCTG GAGGACACCG CCGCGACTCC ATCCTCGCCG ATGCAGTAGA AGCAGTGATT 
GCAGCCATTT ATCTCGACGC CGATTTAGCA ACGTGCCGTA CTGTGGTGTT ACCGTGGTTT 
GAAACAGCAC TCACCGCATT GCCTGTTGGC AAACCCGAAA AAGACCCGAA AACTCGACTC 
CAAGAATGGC TACAAGCACG CCAGTGGTCA TTACCCGTGT ATGAATTGAT CTTCGAGAGC 
GGCGATCCTC ATACCAAGCA CTTCCGAGTG AGTTGCACTC TGGGTGAACT AAAACTGCGC 
ACCGAAGGCG AAGGCAGCTC ACGCCGTCTC GCCGAGCAAG ACGCTGCCTC TCACGCCATC 
GACCAACTGG ATTCAAACAA GTGA 

 

Protein sequence

MISSKASDYQ QRIGYVFTDP SLLLQALRHR SAGTPHNERL EFLGDSVVNL LIAEALFQRW 
PRADEGALTR ARSELVRETS LASIARTMQL GEQLILGPGE LKSGGHRRDS ILADAVEAVI 
AAIYLDADLA TCRTVVLPWF ETALTALPVG KPEKDPKTRL QEWLQARQWS LPVYELIFES 
GDPHTKHFRV SCTLGELKLR TEGEGSSRRL AEQDAASHAI DQLDSNK