Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_1225 |
Symbol | hemC |
ID | 6203280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | - |
Start bp | 1359316 |
End bp | 1360233 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641702753 |
Product | porphobilinogen deaminase |
Protein accession | YP_001829927 |
Protein GI | 182681767 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCTTTAC TTCGTATTGC TACTCGCAAA AGTTTACTTG CTATGTGGCA AAGCGAGTAT GTCGCTGCGC GTTTACGTAT GCTGTGCCCT GATTTAGATG TGGTGTTGGT GCCGATGAGC ACTCGTGGCG ATGAGATCCT GGATCGCTCC CTGGCTGCAA TTGGTGGTAA AGGGCTGTTT CTCAAGGAGC TGGAACTGGC GATGTTACGT GGTGATGCTG ATTGCGCGGT GCATTCGCTG AAAGATGTGC CTATGGATTT GGAGCCCCCA TTTATGCTTG CGGCTGTTTT GAGTCGTGAT GACCCGGCCG ATGCGCTGAT TTCTAATGTC TACCTTTCGC TAGAGTCACT CCCAATTGGG GCGCGTGTGG CGACTTCTTC GCTGCGCCGA CAAGCCCAGT TACGCTTTTA TCGGCCTGAC CTGCGGTTGT TTGACTTGCG GGGTAACGTT AACACGCGCT TGGCGAAGCT TGATAACGGA GATTACGATG CGATCGTGCT GGCTTGTGCG GGGTTACGTC GGCTAGGATT GGAGCAACGC ATGACGGCTC GGCTAGCACC GCCAGAATGG TTACCTGCGC CAGGTCAGGG GGCGATTGCG GTGGAGTCAC TGACCGAGGA TGCTCGGATC GGTACGTTGT TGGCTGGTCT TGACGATCTG CCAACGCGCA AATGCGTGAT TGCTGAGCGT ACGATGAATC GTGCTCTTCA TGGTAGCTGC CATGTGCCAG TGGGGGCTTA TGCATCCTAC GAAGTTGGTG GTATGCGATT ACAGGGCTTG GTGGGTTGTG TTGCCGATGG TCGTCTCGTG CGTGCGGAGC TGTGTTCGGC AAAGGATGAG GGCGATATGC TCGGCAGGGC AGTCGCACAG TGCTTGTTGG ATGCTGGTGC GGCTGAGTTG CTAGCCGCCA CTGCATAG
|
Protein sequence | MPLLRIATRK SLLAMWQSEY VAARLRMLCP DLDVVLVPMS TRGDEILDRS LAAIGGKGLF LKELELAMLR GDADCAVHSL KDVPMDLEPP FMLAAVLSRD DPADALISNV YLSLESLPIG ARVATSSLRR QAQLRFYRPD LRLFDLRGNV NTRLAKLDNG DYDAIVLACA GLRRLGLEQR MTARLAPPEW LPAPGQGAIA VESLTEDARI GTLLAGLDDL PTRKCVIAER TMNRALHGSC HVPVGAYASY EVGGMRLQGL VGCVADGRLV RAELCSAKDE GDMLGRAVAQ CLLDAGAAEL LAATA
|
| |