| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1098 |
|---|
| Symbol | ubiB |
|---|
| ID | 6203899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 1242715 |
|---|
| End bp | 1244373 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641702622 |
|---|
| Product | putative ubiquinone biosynthesis protein UbiB |
|---|
| Protein accession | YP_001829800 |
|---|
| Protein GI | 182681640 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0661] Predicted unusual protein kinase |
|---|
| TIGRFAM ID | [TIGR01982] 2-polyprenylphenol 6-hydroxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.796665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGT TATTCCGGGC CTGCCGCATT GGCAAGGTCA TGCTGCGCTA CCGCCTGGAT
ACGTTGCTGG ACGGTACAGC CGTAGAGCGC TGGTTGCGTT TGGCTAAGCC TTTTGTACCT
CGCATCAGCG CTGAAATTGT TGAGCAGTCC AGAGGGCGTC GGTTGCGTTT GGCACTGCAG
GAATTGGGGC CTATTTTTGT GAAGTTTGGG CAGATTCTGT CCACTCGCAG GGACTTGGTA
CCCCAGGATA TCGGTGATGA GCTGGTCATG CTACAAGACC GAGTAGAGCC TTTCGAGGGG
CAGACTGCGC GCAGTATCAT CGAAACTGCG CTAGGCAAGT CGGTTGAAAG TGCATTCGCA
CACTTCGATA CTGTGCCACT GGCCAGTGCT TCAATCTCGC AGGTCCATGC AGCTACGCTG
CATGACCGAC GTGCAGTTGT GGTCAAAGTG TTGCGTCCTG ATATTGAGCA TCAGATCAGT
GACGACATCG CCTTGCTTAA ATCGCTGGCT ACGTTGGTCG AGCATACTCA CCCTAATGCG
GATAAAATCC GTCCGCGCGA GATTGTGGCG GAGATAGAAA CCACCTTGGC GGCTGAGTTG
GATTTGCAAC GTGAAGGTGC CAACGCCAGT GTGTTGCGTC GCTTCTGGGA GGCGTCCGAC
GACATATATG TACCTGAAGT AATTTGGTCG CACACCGCCG AACGGGTGCT GACTCTGGAA
CGTATGTATG GCATTCCCTC GGACGATATT GCGTTGCTTG ATGCCTCGGG TATTGATCGT
AAAGCTCTTT CGAGCAAGGG AATCCGCGTG TTTTATACCC AGGTGTTCCG CGATAATTTT
TTCCATGCCG ATGCGCACTC TGGAAACATT TGGGTCGACA GTGATCCGGC ACGCAAATCC
AATCCACGTT TTATTGTGCT GGATTTCGGC ATCATGGGCC AACTGTCGCA GAAAGATCAG
TACTATTTGG CAGAGAATTT CATGGCCATC TTCCATAAAG ACTACCGGCG AATCGCTGAG
TTGCATGTGG AAGCAGGCTG GATACCTCCG CATGTCCGCA TTGAGGAGTT GGAAGCAGCG
GCACGTTCAG TCTGTGAACC ATACTTTACG AGGCCTTTAT CCCAGATCTC GCTTGCTGAA
GTAATGATGA AATTGTTCCA TGTTGCCCGA CGTTACCAGC TTACGTTACA GCCTCAATTG
ATTTTGCTTC AAAAGACGCT GCTCAATATT GAGGGTGTAG GTCGTCAACT CGATCCTGAA
TTGGATATCT GGGTCGTAGC GCGCCCAGTG CTCGAACGCA TTCTACGTGC CCGTTACAGT
CCGCGTCATG CGTTGAAGGA GTTAAATAAA CGCTTGCCTG AGATCATGAC TCATGCCCCA
GACACACCGC GCCTCATACA TACCTGGTTA GTACAGCAGG TCGAAAGCCG GAAACAGAAT
GACGTTTATT TGCAACAAAT ACGCGCGTTA GCTATGACTT TGCAAGGCTT GCAGCGCCGT
GTGGTCAATG CGATTGTGGG TAGCGGCTTG CTGGTGGCGG CTGCGGTATT GTATGGCCTA
CATCCGGATG GTTTGTACTT GGGAACGATT CCAGTGTGGA GCTTGATTAG TGGGTGCATC
GGCGCGTTGG CCTTGTTCAG TGCTTGGTGG CGAAGCTAA
|
|---|
| Protein sequence | MKALFRACRI GKVMLRYRLD TLLDGTAVER WLRLAKPFVP RISAEIVEQS RGRRLRLALQ
ELGPIFVKFG QILSTRRDLV PQDIGDELVM LQDRVEPFEG QTARSIIETA LGKSVESAFA
HFDTVPLASA SISQVHAATL HDRRAVVVKV LRPDIEHQIS DDIALLKSLA TLVEHTHPNA
DKIRPREIVA EIETTLAAEL DLQREGANAS VLRRFWEASD DIYVPEVIWS HTAERVLTLE
RMYGIPSDDI ALLDASGIDR KALSSKGIRV FYTQVFRDNF FHADAHSGNI WVDSDPARKS
NPRFIVLDFG IMGQLSQKDQ YYLAENFMAI FHKDYRRIAE LHVEAGWIPP HVRIEELEAA
ARSVCEPYFT RPLSQISLAE VMMKLFHVAR RYQLTLQPQL ILLQKTLLNI EGVGRQLDPE
LDIWVVARPV LERILRARYS PRHALKELNK RLPEIMTHAP DTPRLIHTWL VQQVESRKQN
DVYLQQIRAL AMTLQGLQRR VVNAIVGSGL LVAAAVLYGL HPDGLYLGTI PVWSLISGCI
GALALFSAWW RS
|
|---|
| |