Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0206 |
Symbol | |
ID | 6204012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 276141 |
End bp | 279053 |
Gene Length | 2913 bp |
Protein Length | 970 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641701744 |
Product | beta strand repeat-containing protein |
Protein accession | YP_001828937 |
Protein GI | 182680777 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA TGAAAACGGC ATTTTTTCCC GGTAGCATCC TGGTATTAAC GTTAGTTGCT TTCTTGAGTG CCTGCGGTGG TAGCGGGTTA GTTCGTCCGC CAACGCCAAC GCCAACGCCA ACACCAACAC CAACACCAAC ACCAACACCA ACACCAACAC CAACACCAAC ACCAACACCA TTACCTGTTT TGGATCCGGC GTTAGCTGCC AAGTTTCGCG TGCACCTAGA TGTTACGAAT ACAGAACCCG CTCATACACT TGGCTTTACT GGTAAGGGCT ACATGGTTGG CGTCGTTGAT TCCGGCGTGA ATCGTAACCA TGTGACATTG CACGATCAGG TCATCCACAA CAATGTGTAT GTGGATTATC AAGACCCCGC CAGTCCAGAT GATGTGAGTG GCCATGGCAC CAATGTGGCA CAGCTCATTG CGGGGCAACC CGTTGAATAC TGGCCCGGTG GTATCGCACC AGGTGCGACT ATCTTCTCAG CGCGCGTCTT CTCGTCTGCA GCAGAAAGTG CAAAAGAAAG CCCAATAGGC GGGAACTTTT TTGAAGGAGA AGCAGCCCAG CTAAAACGCG TCAATGCCGA CATGATTGCC GCAGGAGTGC GTATCCAAAA CAACTCCTGG GGATATGAGA ATCAGAACAC CGGCGATAAG CAAGTATGGA TAGATCCAGC GGTGACAGAT GGTTTCGTGA ACGTATACCG TGATTTAGTG CTGAATAACA ATGTCTTAGT GATCTTCGCC AGTGGTAACT ACAGTCAACA GCAACCGGGT CGACTTTCCA GATTGCCGAG CTTGCCCACG GTGGAGGGGG GGGCATCGCC TGCCGATCTG GAAAGGGGAT GGTTAGTGGT TGCTGCACTG GATAGTTTCG ATCATCCCGA CCAATTGACT TCGTACTCGA ACCATTGCGG CATCGCAATG CACTATTGCT TAGCTGCACC AGGTGATCTC ATTGAAATCG ACACTAACGT TACCACTAGC CCAGTGGATG GTGATAAAGG TTATCTAAAT GGTTATTTAA TACAGAACGG CACCTCGTTT GCAGCGCCGT TGGTTTCTGG TGCAGCGGCA TTGGTATGGG AGGCATTTCC CTATTTCAGC AACGACCTGG TGCGGCAGAC CCTGCTTGGT ACGGCGACTG ATCTTGGTGC TCCCGGCGTG GATGAAGTCT TCGGCTATGG TGCACTGAAT GTGGGTAAAG CAGTGCTGGG CCCGGCTAAG TTCGATTGGG GTGATGTCCA AGTTAGCTTT GATGACAGGC GTTCCACCTG GGGCAATGAC ATTACCGGCA GCGGCGGCTT GATCAAGCGT GGTACCGGAA CACTGGTGCT TGGCGGCAGC AATAATCAAT ACACCGGAGC CACCCAAGTC CTGGGAGGCA CATTGCAAGC GTCCAGCTTG GGTGCATCCG CAGTCAGCGT TGCTAATACT GCGACGTTGA TTGGTAGCGG TCGCTTCGGC GGTGCGGTGA GCAATGCCGG CACCCTGGAG CTTGGGAAGG ATGGGCTCAA GGTGCAGGGT GATTACACCC AATTGGAGAC AGGGCGTCTT GCACTGTACG TTGGAGATCA GCTGAGCGTG GCTGGTAATG CCACCCTGAA AGGGGGGGAA CTCCAAGTGT TGGGTAAACG TGATTATGTG ACCTTCAATA CTTCCTACAG CGTATTGCAG GCCGATGGTA GTTTAACCGG CACGTTCTCG CAGTTGACTT GGGGTCCGGC TGTGCTGCTT GGAGAAGGTC GTCTGACTTA CGGCACTAAC AATGCCTACG TGACCCTGCA GCGTCTGAAT GTCAGCGCGG CGGCACAGGC TTTGGGGATC GTTGATAGAG TTGCGCAGGC CTCTGCCCAG CGTGTTGAGC ATGCATTCCG TGCAATTGAT GCACAGCAGG CGCAAGGCGG CGGTGCGTTG CCCACCAGTT TTATTGGGGC GGCAGCGGCA TTGCAACAGT CCAGTAGCGC GGCAGTGGCG GCGGCTTCGT TGCAGAGTTT GTCGGGGCAA TCGCATGTTG CGGCGGCGGC GGCTAGCCTT GATGCCATTG ATTTGGGGCG CCGCAGTTTG GCGACGCGTC TAGATGCGCC TCGTTCGGGC GAGCGTATTG TGACGTGGCA TCAAGCCTTG GGTGGTCCGG GGCACAATGG TGCGGCTAGC GGCACCTTCT CCCTGTCTGG CTGGTTGGTG GGACATGATG CGCAACTTGC CTCCGGTGAC ATTGTGGGTG TTGCTTTTGG TCAGGCCGAT AGCAGCCCCT CCGGTAGTGC CTCTGGGTTG CGAGGGATAG ACAGACAAGT GCAAGGGCGT GTGTATTTAC AGCGCACCCA GGGGCCCTTG TATGTCTTGG GGCAGCTTGG TTTTGGTAGT TTCCAACGTC GCCTGGACCG GCAGTTGCAA CTGGGTGACT GGAACGATTG GACATCCAGT CGCTACAGCG GTCAGTTTTG GAGTGGCAGT GTGGAGGCTG GCTATCACTG GCGTCAGGGT TCCTTGGCAT TGACCCCGTA TCTTGGTCTG GATCAAACGC AACTGCGGAC GGATGGATTC CGTGAGCAGA GTGGCTCTGG CTTTGGCTTA CAGGTACAGT CCGCCCAAGC GACGCGGAGT CAGTTACTGG CCGGTGTGCG TACGGAGTGG CGCTGGGGTG GCGTGCAATG GCGTGGTTAT GGTGAATGGC AGCAGACGTT GCGTCAGAGT GGTTTGAATC CACAGGCCAG CTTTACAGCG ACTTCGTCGT GGACGCCGTT GGTGGCTTCG TCCTGGCCTG GTCGTTCTGG GGGTGTGCTT GGATTATCGA TGGTCTTGCC TGTCGGAGTG ACCGCAGGTC TGTGGACCAT GGGGTTAGAG CATTACTTTG GTACACGTAG CCGTGGGGAG AGTCTTGGAC TGCGTTACCA GCTTGGTTTT TAG
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Protein sequence | MKNMKTAFFP GSILVLTLVA FLSACGGSGL VRPPTPTPTP TPTPTPTPTP TPTPTPTPTP LPVLDPALAA KFRVHLDVTN TEPAHTLGFT GKGYMVGVVD SGVNRNHVTL HDQVIHNNVY VDYQDPASPD DVSGHGTNVA QLIAGQPVEY WPGGIAPGAT IFSARVFSSA AESAKESPIG GNFFEGEAAQ LKRVNADMIA AGVRIQNNSW GYENQNTGDK QVWIDPAVTD GFVNVYRDLV LNNNVLVIFA SGNYSQQQPG RLSRLPSLPT VEGGASPADL ERGWLVVAAL DSFDHPDQLT SYSNHCGIAM HYCLAAPGDL IEIDTNVTTS PVDGDKGYLN GYLIQNGTSF AAPLVSGAAA LVWEAFPYFS NDLVRQTLLG TATDLGAPGV DEVFGYGALN VGKAVLGPAK FDWGDVQVSF DDRRSTWGND ITGSGGLIKR GTGTLVLGGS NNQYTGATQV LGGTLQASSL GASAVSVANT ATLIGSGRFG GAVSNAGTLE LGKDGLKVQG DYTQLETGRL ALYVGDQLSV AGNATLKGGE LQVLGKRDYV TFNTSYSVLQ ADGSLTGTFS QLTWGPAVLL GEGRLTYGTN NAYVTLQRLN VSAAAQALGI VDRVAQASAQ RVEHAFRAID AQQAQGGGAL PTSFIGAAAA LQQSSSAAVA AASLQSLSGQ SHVAAAAASL DAIDLGRRSL ATRLDAPRSG ERIVTWHQAL GGPGHNGAAS GTFSLSGWLV GHDAQLASGD IVGVAFGQAD SSPSGSASGL RGIDRQVQGR VYLQRTQGPL YVLGQLGFGS FQRRLDRQLQ LGDWNDWTSS RYSGQFWSGS VEAGYHWRQG SLALTPYLGL DQTQLRTDGF REQSGSGFGL QVQSAQATRS QLLAGVRTEW RWGGVQWRGY GEWQQTLRQS GLNPQASFTA TSSWTPLVAS SWPGRSGGVL GLSMVLPVGV TAGLWTMGLE HYFGTRSRGE SLGLRYQLGF
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