| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_0206 |
|---|
| Symbol | |
|---|
| ID | 6204012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 276141 |
|---|
| End bp | 279053 |
|---|
| Gene Length | 2913 bp |
|---|
| Protein Length | 970 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641701744 |
|---|
| Product | beta strand repeat-containing protein |
|---|
| Protein accession | YP_001828937 |
|---|
| Protein GI | 182680777 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TGAAAACGGC ATTTTTTCCC GGTAGCATCC TGGTATTAAC GTTAGTTGCT
TTCTTGAGTG CCTGCGGTGG TAGCGGGTTA GTTCGTCCGC CAACGCCAAC GCCAACGCCA
ACACCAACAC CAACACCAAC ACCAACACCA ACACCAACAC CAACACCAAC ACCAACACCA
TTACCTGTTT TGGATCCGGC GTTAGCTGCC AAGTTTCGCG TGCACCTAGA TGTTACGAAT
ACAGAACCCG CTCATACACT TGGCTTTACT GGTAAGGGCT ACATGGTTGG CGTCGTTGAT
TCCGGCGTGA ATCGTAACCA TGTGACATTG CACGATCAGG TCATCCACAA CAATGTGTAT
GTGGATTATC AAGACCCCGC CAGTCCAGAT GATGTGAGTG GCCATGGCAC CAATGTGGCA
CAGCTCATTG CGGGGCAACC CGTTGAATAC TGGCCCGGTG GTATCGCACC AGGTGCGACT
ATCTTCTCAG CGCGCGTCTT CTCGTCTGCA GCAGAAAGTG CAAAAGAAAG CCCAATAGGC
GGGAACTTTT TTGAAGGAGA AGCAGCCCAG CTAAAACGCG TCAATGCCGA CATGATTGCC
GCAGGAGTGC GTATCCAAAA CAACTCCTGG GGATATGAGA ATCAGAACAC CGGCGATAAG
CAAGTATGGA TAGATCCAGC GGTGACAGAT GGTTTCGTGA ACGTATACCG TGATTTAGTG
CTGAATAACA ATGTCTTAGT GATCTTCGCC AGTGGTAACT ACAGTCAACA GCAACCGGGT
CGACTTTCCA GATTGCCGAG CTTGCCCACG GTGGAGGGGG GGGCATCGCC TGCCGATCTG
GAAAGGGGAT GGTTAGTGGT TGCTGCACTG GATAGTTTCG ATCATCCCGA CCAATTGACT
TCGTACTCGA ACCATTGCGG CATCGCAATG CACTATTGCT TAGCTGCACC AGGTGATCTC
ATTGAAATCG ACACTAACGT TACCACTAGC CCAGTGGATG GTGATAAAGG TTATCTAAAT
GGTTATTTAA TACAGAACGG CACCTCGTTT GCAGCGCCGT TGGTTTCTGG TGCAGCGGCA
TTGGTATGGG AGGCATTTCC CTATTTCAGC AACGACCTGG TGCGGCAGAC CCTGCTTGGT
ACGGCGACTG ATCTTGGTGC TCCCGGCGTG GATGAAGTCT TCGGCTATGG TGCACTGAAT
GTGGGTAAAG CAGTGCTGGG CCCGGCTAAG TTCGATTGGG GTGATGTCCA AGTTAGCTTT
GATGACAGGC GTTCCACCTG GGGCAATGAC ATTACCGGCA GCGGCGGCTT GATCAAGCGT
GGTACCGGAA CACTGGTGCT TGGCGGCAGC AATAATCAAT ACACCGGAGC CACCCAAGTC
CTGGGAGGCA CATTGCAAGC GTCCAGCTTG GGTGCATCCG CAGTCAGCGT TGCTAATACT
GCGACGTTGA TTGGTAGCGG TCGCTTCGGC GGTGCGGTGA GCAATGCCGG CACCCTGGAG
CTTGGGAAGG ATGGGCTCAA GGTGCAGGGT GATTACACCC AATTGGAGAC AGGGCGTCTT
GCACTGTACG TTGGAGATCA GCTGAGCGTG GCTGGTAATG CCACCCTGAA AGGGGGGGAA
CTCCAAGTGT TGGGTAAACG TGATTATGTG ACCTTCAATA CTTCCTACAG CGTATTGCAG
GCCGATGGTA GTTTAACCGG CACGTTCTCG CAGTTGACTT GGGGTCCGGC TGTGCTGCTT
GGAGAAGGTC GTCTGACTTA CGGCACTAAC AATGCCTACG TGACCCTGCA GCGTCTGAAT
GTCAGCGCGG CGGCACAGGC TTTGGGGATC GTTGATAGAG TTGCGCAGGC CTCTGCCCAG
CGTGTTGAGC ATGCATTCCG TGCAATTGAT GCACAGCAGG CGCAAGGCGG CGGTGCGTTG
CCCACCAGTT TTATTGGGGC GGCAGCGGCA TTGCAACAGT CCAGTAGCGC GGCAGTGGCG
GCGGCTTCGT TGCAGAGTTT GTCGGGGCAA TCGCATGTTG CGGCGGCGGC GGCTAGCCTT
GATGCCATTG ATTTGGGGCG CCGCAGTTTG GCGACGCGTC TAGATGCGCC TCGTTCGGGC
GAGCGTATTG TGACGTGGCA TCAAGCCTTG GGTGGTCCGG GGCACAATGG TGCGGCTAGC
GGCACCTTCT CCCTGTCTGG CTGGTTGGTG GGACATGATG CGCAACTTGC CTCCGGTGAC
ATTGTGGGTG TTGCTTTTGG TCAGGCCGAT AGCAGCCCCT CCGGTAGTGC CTCTGGGTTG
CGAGGGATAG ACAGACAAGT GCAAGGGCGT GTGTATTTAC AGCGCACCCA GGGGCCCTTG
TATGTCTTGG GGCAGCTTGG TTTTGGTAGT TTCCAACGTC GCCTGGACCG GCAGTTGCAA
CTGGGTGACT GGAACGATTG GACATCCAGT CGCTACAGCG GTCAGTTTTG GAGTGGCAGT
GTGGAGGCTG GCTATCACTG GCGTCAGGGT TCCTTGGCAT TGACCCCGTA TCTTGGTCTG
GATCAAACGC AACTGCGGAC GGATGGATTC CGTGAGCAGA GTGGCTCTGG CTTTGGCTTA
CAGGTACAGT CCGCCCAAGC GACGCGGAGT CAGTTACTGG CCGGTGTGCG TACGGAGTGG
CGCTGGGGTG GCGTGCAATG GCGTGGTTAT GGTGAATGGC AGCAGACGTT GCGTCAGAGT
GGTTTGAATC CACAGGCCAG CTTTACAGCG ACTTCGTCGT GGACGCCGTT GGTGGCTTCG
TCCTGGCCTG GTCGTTCTGG GGGTGTGCTT GGATTATCGA TGGTCTTGCC TGTCGGAGTG
ACCGCAGGTC TGTGGACCAT GGGGTTAGAG CATTACTTTG GTACACGTAG CCGTGGGGAG
AGTCTTGGAC TGCGTTACCA GCTTGGTTTT TAG
|
|---|
| Protein sequence | MKNMKTAFFP GSILVLTLVA FLSACGGSGL VRPPTPTPTP TPTPTPTPTP TPTPTPTPTP
LPVLDPALAA KFRVHLDVTN TEPAHTLGFT GKGYMVGVVD SGVNRNHVTL HDQVIHNNVY
VDYQDPASPD DVSGHGTNVA QLIAGQPVEY WPGGIAPGAT IFSARVFSSA AESAKESPIG
GNFFEGEAAQ LKRVNADMIA AGVRIQNNSW GYENQNTGDK QVWIDPAVTD GFVNVYRDLV
LNNNVLVIFA SGNYSQQQPG RLSRLPSLPT VEGGASPADL ERGWLVVAAL DSFDHPDQLT
SYSNHCGIAM HYCLAAPGDL IEIDTNVTTS PVDGDKGYLN GYLIQNGTSF AAPLVSGAAA
LVWEAFPYFS NDLVRQTLLG TATDLGAPGV DEVFGYGALN VGKAVLGPAK FDWGDVQVSF
DDRRSTWGND ITGSGGLIKR GTGTLVLGGS NNQYTGATQV LGGTLQASSL GASAVSVANT
ATLIGSGRFG GAVSNAGTLE LGKDGLKVQG DYTQLETGRL ALYVGDQLSV AGNATLKGGE
LQVLGKRDYV TFNTSYSVLQ ADGSLTGTFS QLTWGPAVLL GEGRLTYGTN NAYVTLQRLN
VSAAAQALGI VDRVAQASAQ RVEHAFRAID AQQAQGGGAL PTSFIGAAAA LQQSSSAAVA
AASLQSLSGQ SHVAAAAASL DAIDLGRRSL ATRLDAPRSG ERIVTWHQAL GGPGHNGAAS
GTFSLSGWLV GHDAQLASGD IVGVAFGQAD SSPSGSASGL RGIDRQVQGR VYLQRTQGPL
YVLGQLGFGS FQRRLDRQLQ LGDWNDWTSS RYSGQFWSGS VEAGYHWRQG SLALTPYLGL
DQTQLRTDGF REQSGSGFGL QVQSAQATRS QLLAGVRTEW RWGGVQWRGY GEWQQTLRQS
GLNPQASFTA TSSWTPLVAS SWPGRSGGVL GLSMVLPVGV TAGLWTMGLE HYFGTRSRGE
SLGLRYQLGF
|
|---|
| |