| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_0084 |
|---|
| Symbol | |
|---|
| ID | 6202729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 115348 |
|---|
| End bp | 116379 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641701613 |
|---|
| Product | 2-nitropropane dioxygenase NPD |
|---|
| Protein accession | YP_001828815 |
|---|
| Protein GI | 182680655 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00133989 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGATCA ATTCCAACCT TTTTGATTGT TTGTTGCCGA TTGTTGCTGC ACCGATGGCC
GGTGGGCCAA CCACTGTTGC TCTGGCGCAG GCCGTGAGTG GTGTCGGAGG CTTCCCATTC
CTTGCCGGCG GGTATAAATC CGTCGAGGCG CTTGCGACTG AGATCGCTGT GTTACGAGCG
AGTGGCGGTA ATTTTGGGGT CAATCTGTTC GTTCCCTCGC CGGACATGGT GGATGCGGAG
GCATTCAGAA TCTACGCAGC CAAACTACAG TCTGAAGCTC TGCCGTATGG GCTTCGTCTC
GATCCGCTAC CGGTGATGGG TGATGATGAT GGCTGGCCGG ATAAGCTGGC GTTGTTACTG
AACGATCCGG TGCCGGTTGT GTCGTTTACT TTTGGATTGC CCGCAGTGCG GGACATTGCC
GCGCTCCGAT GTGCTGGAAG CCGGGTGCTG GCAAGTGTCA CCTTACCTGC GGAGGCGCAG
GCAGCGATGG AAGCGGGTGT TGATGGATTG GTTGTGCAGG GCCCCGATGC TGGAGGGCAC
AGCGCGACGT ATGATCCTGG GCGTCCATTC ACCCCATTGA AGACGGTCAG CTTAGTACGT
CGCGTGTGTG CTGTGAGCAG CTTGCCGGTG ATTGCGGCAG GTGGTGTGGA TGGCCCCGTG
ATGGTCCGCG CGTTGTTGCA AGCAGGTGCT GCTGCGGTTG CGATCGGCAC GCTGCTGCTG
CGTACCAAGG AGTCAGGGGC GACGCAGGTG CATAAGGACG CTTTGGCGAA CCCTGCGTAT
ACGGAGACAG TAATCACTCA CGCGTTTACT GGTCGTCCTG CCCGAACGCT GCGTAATGGG
TTTGTTAATC GCTATCATGC GTCGGCTCCG TTGGGATATC CGGCGATACA TCATCTGACC
CGTCCGCTAC GACAGGCGGC GGCGAGTGCG GGAGATGCCG ATGTGTTGCA TCTTTGGGCT
GGAACTGGAT ACCGCCAAGC CATGGATGGT TCCGCGGTTG ACGTGATTCA ATATTTGGCT
GCTGGATTGT GA
|
|---|
| Protein sequence | MKINSNLFDC LLPIVAAPMA GGPTTVALAQ AVSGVGGFPF LAGGYKSVEA LATEIAVLRA
SGGNFGVNLF VPSPDMVDAE AFRIYAAKLQ SEALPYGLRL DPLPVMGDDD GWPDKLALLL
NDPVPVVSFT FGLPAVRDIA ALRCAGSRVL ASVTLPAEAQ AAMEAGVDGL VVQGPDAGGH
SATYDPGRPF TPLKTVSLVR RVCAVSSLPV IAAGGVDGPV MVRALLQAGA AAVAIGTLLL
RTKESGATQV HKDALANPAY TETVITHAFT GRPARTLRNG FVNRYHASAP LGYPAIHHLT
RPLRQAAASA GDADVLHLWA GTGYRQAMDG SAVDVIQYLA AGL
|
|---|
| |