Gene XfasM23_0074 details

Gene Information

• Locus tag: XfasM23_0074
• Symbol: rimM
• ID: 6202566
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M23
• Kingdom: Bacteria
• Replicon accession: NC_010577
• Strand: +
• Start bp: 104705
• End bp: 105217
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641701603
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001828805
• Protein GI: 182680645
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGATA ATGAGCGCCG TATCCTGCTA GGAAGGGTTG TAGGTGGTTT CGGGTTGCGT 
GGTGAAATCA AGATAGAGTC TTGGACTGAG CCACGGGATG CGATCTTCCG TTACCAGCCG 
TGGTTATTAC GTTCTCCTAC GGGTACCGAG TCCATGTTGA ATGGTGCCCG TGGCTACGAG 
ACTGGCAAGC GTTTGATTGC AACCTTTCCT GGCATCAATG ATCGTAATGG AGTCGAAGCG 
ATCTGTGGTA CGGAAATCTA TGTGCCACGC AGCGCCTTGC CTCCACCTCA CCCCGACGAG 
TATTACTGGG TCGATTTGGA AGGGCTGCAA GTACACACCC TTGAAGGTGT GGTTCTCGGT 
AGCGTTTCCC ATCTGTTTTC CAACGGCGCC AATGATGTGA TAGTCATCCA TGGCGAGCGC 
GAGCGCTTGA TCCCGTTTGT ACAGCCTGAT TACGTGAAGT CGGTTGATTT TGAGGCTGAG 
CGTATTGTTG TCGATTGGGA TCCTGAGTTC TGA 

 

Protein sequence

MKDNERRILL GRVVGGFGLR GEIKIESWTE PRDAIFRYQP WLLRSPTGTE SMLNGARGYE 
TGKRLIATFP GINDRNGVEA ICGTEIYVPR SALPPPHPDE YYWVDLEGLQ VHTLEGVVLG 
SVSHLFSNGA NDVIVIHGER ERLIPFVQPD YVKSVDFEAE RIVVDWDPEF