| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4083 |
|---|
| Symbol | |
|---|
| ID | 6204207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5289153 |
|---|
| End bp | 5289671 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641693751 |
|---|
| Product | UspA domain-containing protein |
|---|
| Protein accession | YP_001820957 |
|---|
| Protein GI | 182415891 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.391845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.267182 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCCCAT GTTACGCCAA TCTGCGCGTA GTCACTGCTG AGCATATCTG GCACAGTGCA
GGCGTGACGA CGGTCCTCAC CCCTGTGGAC TTCTCCGGAA TCACCAATTC CGTAGTATCC
CAGGCAATCG CCCTCGCTAA GGCGACTGGT GGCCGGATCG TGTTACTGAA CGTGTTGCAG
CCGCCGGTGA TCACCAGCGA ATACGGCCCG TTCATGGAAA ACATCGGCGA GATCGTTCTG
GTCGGTGAGA AGGCGGCGGC CAAGCAGTTG GCTCGCTTGG AGGAATCTTT GACAGCCCAA
GGAATCGAAA CCGAAACGCT GCAGTTAACG GGCACGCCGG TGACGAACAT CCTGAAGCAA
GCGGAGAAGA CGCAGGCAGA CTACATCGTG ATGGGCTCGC ATGGGCACAC GGCGTTTTAC
GATCTGCTGG TCGGCAGCAC CACGCACGGC GTGTTGCTCC GCGCGACTTG TCCGGTGGTC
ATCGTCCCGG CCGCGAAAAA GAAGGGACGG AAGAAATAA
|
|---|
| Protein sequence | MCPCYANLRV VTAEHIWHSA GVTTVLTPVD FSGITNSVVS QAIALAKATG GRIVLLNVLQ
PPVITSEYGP FMENIGEIVL VGEKAAAKQL ARLEESLTAQ GIETETLQLT GTPVTNILKQ
AEKTQADYIV MGSHGHTAFY DLLVGSTTHG VLLRATCPVV IVPAAKKKGR KK
|
|---|
| |