| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3939 |
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| Symbol | |
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| ID | 6206318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 5113335 |
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| End bp | 5114438 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641693607 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001820813 |
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| Protein GI | 182415747 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.407918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT TCCTGTTTAT CGCTGCGGCG CTGGTCGTGC TGGGTGTTGC GTTGAGCCTC
TACCTGCGGC CAACGGCGCA AGTCAGCGCG GCGGTCAAGG ACCGCGCCGT CAATCTCGTG
CCCGGCAGCG TCATCGTGCG GGCCGAGTAT CAGATGGAAC TGAAGAGCGA GATTGGCGGC
CGGGTCATCA AGAGCGAGCT GGATCCGGGC TTGAAGGTCC GCCAAGGCGA TTTCCTGGTG
CAACTCGACA CCGGCGATCT TGAACTCGAA ATCGAGCGGA TCGAGAGCGA CTACGCGGCG
CGAAAAAAAA GCCTCGAGAT CGGCTCGTCG ACCCGGCTCG ACCTCGTCAC GGCGCGCGAA
AACATCGCGC ATCTCGAGCG GATGGTGGAG AGCGGAAACT ACCCGGTCGC GGAGCTGGAG
AAACAGCGGC GTGGGCTGAA GGCGATCGAA CAGAAGCTGG CCTTGGAGGA GGTGGGCAAC
GAGCACGAAC TGGCGACGTT CGAGAACACG CTGAAGGCGA AGCGGCGCGA GTTGGAGAAA
ATGACCATCG TCGCTCCATT TGACGGCGTG GTCGCCGAAG TGCGCGCACG ACCGGGCGAC
TTGATCGGCG GCGGCGCGCC CATCGCGATC CTGATCAGCA CGACGCGCAC AGTGGAGGGA
CGGATCAGCG AGGAGAACTT CGCCGGGGTG CGCGAGGGAC AGGATGCGCA GGTGCGGTTT
CTTGGCTACG GGGAGCAACA GTATCGGGCT AAAGTCACCA AGATCCTGCC CACCGCCGAT
CCGGCTACGC AGCGTTACAT CGTGTATCTC GAGGTGCAGA TCGAACCGGA GAAGCTGGTC
CCGGGGCTCA CCGGCGAACT GACGATCGTG GTCGGCGAGC GCGATGCCGA GGCGATCATT
CCGCGGCGCG CGCTGTTCGG AAACAATGTC TTGGTCGTAG AGAACGGCCG CGTGCGGCTG
CGCACGGTGG AGGTGGGTTA TGTCAGCCTC ACGTCCGTGG AGATTCTGAA AGGGCTCAAG
GCCGGTGAGC AGGTGATCGT GGACGATCTC GATCGTTTTC GTGACGGTGA TCGCGTCCGC
GTGGACGATG CGTCGGGCCG TTAA
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| Protein sequence | MKKFLFIAAA LVVLGVALSL YLRPTAQVSA AVKDRAVNLV PGSVIVRAEY QMELKSEIGG
RVIKSELDPG LKVRQGDFLV QLDTGDLELE IERIESDYAA RKKSLEIGSS TRLDLVTARE
NIAHLERMVE SGNYPVAELE KQRRGLKAIE QKLALEEVGN EHELATFENT LKAKRRELEK
MTIVAPFDGV VAEVRARPGD LIGGGAPIAI LISTTRTVEG RISEENFAGV REGQDAQVRF
LGYGEQQYRA KVTKILPTAD PATQRYIVYL EVQIEPEKLV PGLTGELTIV VGERDAEAII
PRRALFGNNV LVVENGRVRL RTVEVGYVSL TSVEILKGLK AGEQVIVDDL DRFRDGDRVR
VDDASGR
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