Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_3899 |
Symbol | |
ID | 6207230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | + |
Start bp | 5062609 |
End bp | 5064387 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641693567 |
Product | TrkA domain-containing protein |
Protein accession | YP_001820773 |
Protein GI | 182415707 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0471] Di- and tricarboxylate transporters |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.345566 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.118663 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACTCTCT CCATCGCCCT GCTCCTCGGC TTGATCGTCG TCGCGCTGGT GTTGTTTTCA TTCGAGTGGG TGTCGAGCGA CGTGGTCGCG CTCGGGCTGC TCCTTGCCCT CATCCTTACC GGACTGCTGC CCGTGAAGGA GGCCTTCGCC GGCTTCGGCA GCGAAACCGT GCTCATGATT TTCGCGCTGC TCGTGATGAC CTCGGCCCTG GTGAAAACCG GCATGGTCGA TCTCGTGGCG CAGGCGATTC TCCGTCACGC CGGCACGCGG TTCACCGCCC TGTTCGCCGT CATCCTGCTC ACCGTGGCCG GCCTGAGCGC CTTCATCAGC AACACCGCGG CCGCCGCGCT GTTTCTGCCG ATCGTCCTCG GCTTGGCCGC CAAGGCGAAG GTCTCGCCCT CCCGCCTGCT GATGCCGGTC GCCTTCGCCT CGATCCTCAC CAGTTCGGTG ACGCTGATCA GCACCTCCAC CAATCTCGTG GTCAGCGGAC TTATGACCCG GGCCGGGCTG GCGCCCTTGC GCATGTTTGA ACTCGCGCCG GTCGGCATCC CGATCGCCGT CGTCGGCCTC GCCTACATGT TCTTCATCGG GCGCAAGCTC ATCCCCGACC GCGCGCCCGC GAGCGGGTTG CTCGATCAAT TCGGCGTCCG TTCCTACATC ACCGAGGTGC TCGTGCTGCC CGATTCGCCG CTCGTCCACA AAACCCTCGC CGAATCCAAC CTCGGTCGGG ATCTGGACCT CGAGATCGTC CGGGTCCTGC GCAAGCCCGA CGTCTCGCTC TGGCCCCGGC GCAACATGAC GCTGCGCGCC GGCGACGTCC TGCTCGTCCG CGGCGCGCGG GAAGACGTGC TGAAGGTCAA GGATACCGCC GGCATCGAGA TCCGGCCCGA TGTGGAGCTG TCGGATCCCG ATCTCCGCGC CGAAGACACG CAGCTCGTCG AGGCCCTGGT CGTGCCGCGC TCGCCCATGG TGGGTCGCAC GCTCCGCCTG ATCGGCCTGC GCGAACGCTA TCGCGTGCAG GTGCTCGCGA TCAACCGCCA TGGCCGCAAC CTGCTCGAGA AACTCAGCCA CACACTCCTG CGCGTGGGCG ACGTGCTGCT GGTGCAGGGC CGGCCGCAGG ATCTCGCCCG CTTGTCCGAG GACAACATGG TGAGCGTCCT CAATGCGGTG AACGAGCGCC GCATCGACCG GCCCCGGGCC TGGCGCGCGA CGATCATCTT CGCCGGCTCG CTGGCGCTGG CCACCTTCAG TGTTCTGCCC CTCCCGGTCG CCGTCCTGCT CGGCGCCTTC GCGATTTTCC TCACGCGCTG CATCTCCCCG ACCGACGCGT ATCGCGACAT GGAGTGGCGT GCGGTCATCC TCATCGCCTG CATGCTCGCG CTGGGCGAGG CGATGATGCG CACCGGCACC GCCACTTATC TGGCCCAGCA CGTCGCCACG TGGACCGCCA ACTTCTCCCC GGGCTGGCTG CTCGGCGGAT TCTTCGTTCT CACCGTCGCG CTCACCCAGC CCATGTCGAA CCAGGCCGCC GCCGCCGTCC TGTTGCCGAT CGCGGTCCAG ACCGCGACGC ATGCCGGACT GAACCCGCGC GCGTTCGCGA TCATGATCGC GGTGGCCGCC AGCTGTTCGT ATCTCACGCC ACTCGAACCG GCGTGCTTGA TGGTCTACGG TCCCGGGCAC TATCGCTTCA TCGATTTCGT GCGGGTCGGC GCCCCGCTCA CTCTCCTCCT CTTCCTGATT GCGCTGGTCC TCGTTCCGCG CACCTGGCCG TTGCTGTAA
|
Protein sequence | MTLSIALLLG LIVVALVLFS FEWVSSDVVA LGLLLALILT GLLPVKEAFA GFGSETVLMI FALLVMTSAL VKTGMVDLVA QAILRHAGTR FTALFAVILL TVAGLSAFIS NTAAAALFLP IVLGLAAKAK VSPSRLLMPV AFASILTSSV TLISTSTNLV VSGLMTRAGL APLRMFELAP VGIPIAVVGL AYMFFIGRKL IPDRAPASGL LDQFGVRSYI TEVLVLPDSP LVHKTLAESN LGRDLDLEIV RVLRKPDVSL WPRRNMTLRA GDVLLVRGAR EDVLKVKDTA GIEIRPDVEL SDPDLRAEDT QLVEALVVPR SPMVGRTLRL IGLRERYRVQ VLAINRHGRN LLEKLSHTLL RVGDVLLVQG RPQDLARLSE DNMVSVLNAV NERRIDRPRA WRATIIFAGS LALATFSVLP LPVAVLLGAF AIFLTRCISP TDAYRDMEWR AVILIACMLA LGEAMMRTGT ATYLAQHVAT WTANFSPGWL LGGFFVLTVA LTQPMSNQAA AAVLLPIAVQ TATHAGLNPR AFAIMIAVAA SCSYLTPLEP ACLMVYGPGH YRFIDFVRVG APLTLLLFLI ALVLVPRTWP LL
|
| |