| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3813 |
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| Symbol | |
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| ID | 6205524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4953248 |
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| End bp | 4956421 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641693481 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001820688 |
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| Protein GI | 182415622 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.353307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.286088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTCT CCGATTTCTT CATCAAGCGT CCGATCTTCG CGGGCGTCGT TTCCACGATC
ATCTTCCTCG TCGGTGCGAT CTCACTGTGG CAACTGCCGG TCAGCGAGTA TCCCGAAGTC
GTGCCGCCGA CCGTCGTCGT CCGCGCGGTG TATCCCGGTG CAAATCCCAA GACGATCTCC
GAAACCGTCG CCGCGCCGCT CGAGCAATCG ATCAACGGCG TGGAGAACTC GCTCTACATG
TCGTCGCAGG CGACGAGCGA CGGCGTGATG ACGCTCACCG TTACGTTCAA GGTCGGCACC
GATCTCGATA ACGCGCAGGT GCAGGTGCAG AACCGCGTCG CCCAGGCCGA GCCGAAGCTG
CCGGAGGTCG TGCGTCGGCT CGGGATCACG ACGACCAAGA CCTCGCCCGA CCTGCTCATG
GTCGTGCACC TGTTCTCGCC GGACAACCGC TACGACGACA TCTACGTCCG CAACTACGCC
TCGCTGCAGG TGCGCGACGT GCTCGCGCGG CTGCCGGGGG TAGGGCAGGT GCGCATCTTT
GGGTCGGGCG ACTACGCCAT GCGCGTGTGG CTCGATCCGA ACAAAGTCGC GGCGCGGGGG
CTCACCGCTT CCGAGGTCGT CGCCGCGATT CGCGAACAGA ACGTGCAAGT CGCTTCGGGC
GCGGTCGGCC AGCAGCCGAA CCCCAACGCG ATCAGCACGG AGCTGCTGAT CAACACGCAG
GGCCGGCTCA CGACCGAGGA CGAGTTTGGC GCCATCATCA TCAAGACCGG CGCGCACGGC
GAGCGCGTGC AGCTGCGCGA CGTCGCGCGC GTCGAGCTCG GCGCCGCCGA CTACGCGCTC
CGCTCGCTCC TGAACAACAA GCCGGCCGTC GCGCTGCCGA TTGCGCAACT GCCGGGGTCC
AACGCCATCG CCACCTCCGA CGCGGTGCGC GCGACCATGA CCGAGCTGAA GAAAAATTTC
CCGGAGGGGC TCGACTACAG CATCGTCTAC GATCCGACGA TCTTCGTGCG CGAATCGATC
CGCGCGGTCG TGCACACGCT GCTCGAGGCG ATCGTGCTGG TGGTGCTCGT GGTGATCCTG
TTCCTGCAGA CGTGGCGCGC GTCCATCATC CCGCTGGCGG CCGTGCCGGT CTCCCTCGTC
GGCACGTTCG CGGTGATGCA CGCGCTCGGA TTTTCCATCA ACGCGCTCTC GCTGTTCGGA
CTCGTGCTCG CGATCGGCAT CGTGGTCGAC GACGCGATCG TGGTCGTCGA GAACGTCGAG
CGGAACATCG CGCTCGGCAA AACCCCGTTC GAGGCCACCA AGCAGGCGAT GCGCGAGGTG
ACCGGCCCAA TCATCGCCAC CGCGCTCGTG CTCTCGGCGG TCTTCATTCC CACGGCGTTC
ATCAGTGGGC TGACCGGACA GTTCTACAAG CAGTTCGCCA TCACGATCGC GATCTCGACG
ATCATCTCGG CGTTCAATTC GCTGACGCTT TCGCCCGCGC TGAGTGCACT GCTGCTCCGC
GATCATCACG CGCCAAAGGA CTGGCTGACG CGCGGCATGG ATCGTTCGCT CGGCTGGTTC
TTCCGGCCGT TCAACCGGTT CTTCGAATGG TCCGCGCGGA AATATTCGCA CGGCGTGGCG
CGACTGCTGC GCGTCTCGGC CGTCGCGCTG CTGGTGTACG CGGGGTTGCT CGCGTTCACG
GCGCTCTCTT TCCGCAAGAT TCCGACCGGC TTCGTGCCGT CGCAGGACAA GCAGTATCTC
GTGGCGTTCG CACAACTTCC GGCTGCAGCG TCACTCGAAC GCACCGACGC GGTGATCCGT
CGGATGAGCG AGATTGCCCT CAATCATCCC GGCGCGCAAA ACGCGATCGC GTTCCCCGGA
CTCTCGATCA ACGGGTTCAC CAACTCGCCG AACAGCGGGA TCGTGTTCGT GGCGCTGAAG
CCCTTCGAGG AGCGTCGCAG CGCGGAGCTT TCCGGCCAGG CGATCGCGCA GCAGCTGCAG
CAGCAGTTTG GTGAGATCCA GGACGCCTAC ATCGCGATCT TCCCGCCGCC GCCCGTGCAG
GGGCTCGGCA CGATCGGCGG GTTCAAGCTC TACGTCGAGG ACCGCGGCGA CCACGGCTTG
GATGCGCTCT ACGCGGCGAC TCAGGGCTTG GTTGCGCAGG CGGCGCAGAC GCCGGTGCTC
ACGCGGGTGT TCTCCGGTTT CACCATCAAC ACGCCGCAGC TGCAGGCGGA CGTCGACCGC
GCGAAGGCGA AGAGCCAGGG CGTCCCGCTC CAGAATGTTT TCGAGACGAT GCAGATCAAC
CTCGGCTCGC TCTACGTGAA TGATTTCAAC CGGTTCGGCC GCACCTACCA GGTGATCGCG
CAGGCCGACG CGGAGTTTCG CCAGAAGCCG GACGACATCC TGCGGCTCAA GACCCGCAAC
GCCGCCGGCC AGCTCGTCCC GCTCGGCGCC GTCGTCAACG TCAGCGAGAC CTACGGGCCC
GACCGCGTGG TGCGCTACAA CGGTTATCCG GCCGCCGAAA TCAACGGCGC GCCGGCGCCT
GGGTTCAGCT CGGGTCAGGC GGAGGCGGCG ATGGAGCAGC TCGCGCGCGA TCATCTGCCC
ACCCGCATGG CGCTGGATTG GACGGAGCTG ACTTACCAGA AAATCATCGC GGGCAACACC
GGCGTGCTCG TGTTTCCGCT GAGCCTCCTG CTCGTGTTCC TCGTCCTCGC GGCACAATAC
GAGAGCTTCC GGCTGCCGTT CGCGGTACTG CTAATCGTGC CGATGGCGCT GTTCTCCGCC
ATGGTCGGAC TCTGGCTGAC GCACGGCGAA AACAACGTGT TCACGCAGAT TGGGCTGATG
GTGCTGATCG GCTTGGCGGC GAAAAACGCC ATCCTGATCG TCGAGTTCGC CCTCAAGCGC
CGCGAGGAAG GCGAGAGCGT CGTGCAGGCG GCGCTCGATG CCGCGCGGCT GCGGCTGCGC
CCGATTCTGA TGACCTCGAT CGCTTTCATC GCCGGCGTCT TCCCGCTCGT GGTCAGCACC
GGCGCCGGCG CGGAGATGCG GCGCGCGATG GGCGTCGCCG TGTTCGCCGG CATGATTGGC
GTCACGTTGT TCGGCCTCTT TCTGACGCCG GTGTTCTACG TCGTCCTCGA AAAACTTGGC
GTGCGCAAAC CCGCCGCCGC CGCTGCACCG CTGCCCGCGC CGCAATCCGC CTGA
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| Protein sequence | MNLSDFFIKR PIFAGVVSTI IFLVGAISLW QLPVSEYPEV VPPTVVVRAV YPGANPKTIS
ETVAAPLEQS INGVENSLYM SSQATSDGVM TLTVTFKVGT DLDNAQVQVQ NRVAQAEPKL
PEVVRRLGIT TTKTSPDLLM VVHLFSPDNR YDDIYVRNYA SLQVRDVLAR LPGVGQVRIF
GSGDYAMRVW LDPNKVAARG LTASEVVAAI REQNVQVASG AVGQQPNPNA ISTELLINTQ
GRLTTEDEFG AIIIKTGAHG ERVQLRDVAR VELGAADYAL RSLLNNKPAV ALPIAQLPGS
NAIATSDAVR ATMTELKKNF PEGLDYSIVY DPTIFVRESI RAVVHTLLEA IVLVVLVVIL
FLQTWRASII PLAAVPVSLV GTFAVMHALG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIALGKTPF EATKQAMREV TGPIIATALV LSAVFIPTAF ISGLTGQFYK QFAITIAIST
IISAFNSLTL SPALSALLLR DHHAPKDWLT RGMDRSLGWF FRPFNRFFEW SARKYSHGVA
RLLRVSAVAL LVYAGLLAFT ALSFRKIPTG FVPSQDKQYL VAFAQLPAAA SLERTDAVIR
RMSEIALNHP GAQNAIAFPG LSINGFTNSP NSGIVFVALK PFEERRSAEL SGQAIAQQLQ
QQFGEIQDAY IAIFPPPPVQ GLGTIGGFKL YVEDRGDHGL DALYAATQGL VAQAAQTPVL
TRVFSGFTIN TPQLQADVDR AKAKSQGVPL QNVFETMQIN LGSLYVNDFN RFGRTYQVIA
QADAEFRQKP DDILRLKTRN AAGQLVPLGA VVNVSETYGP DRVVRYNGYP AAEINGAPAP
GFSSGQAEAA MEQLARDHLP TRMALDWTEL TYQKIIAGNT GVLVFPLSLL LVFLVLAAQY
ESFRLPFAVL LIVPMALFSA MVGLWLTHGE NNVFTQIGLM VLIGLAAKNA ILIVEFALKR
REEGESVVQA ALDAARLRLR PILMTSIAFI AGVFPLVVST GAGAEMRRAM GVAVFAGMIG
VTLFGLFLTP VFYVVLEKLG VRKPAAAAAP LPAPQSA
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