Gene Oter_3759 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_3759 
Symbol 
ID6207022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp4887381 
End bp4888061 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content62% 
IMG OID641693426 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001820634 
Protein GI182415568 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCTG ACACGATGAC GACTCCAATC GAAAGCCCCG AAACGATCAG CGACTTTGCG 
GTGATTGATG AGGTGGTGCG CGGCAACCGC GAGATGTTCG AGGTGCTCGT GCGCCGGCAC
AACCAGCGGC TGTTCCGCGT CGGCATGGCC TGCCTCGGCC GGCGTGAGCT CGTGGAGGAT
GCGATGCAGA ACGCGTATCT GAAGGCTTTC CTGCACCTGC CGCGATTCCG AAGGTCGGCC
GCCTTCGCGA CCTGGTTGAC ACGGATCATG GTCAACGAAT GCCGGATGCT CCTGCGCAAG
CAGCACACCG TGCGCGAGGA CGAGTGGCTC GAGGAGGATC ACACTGCGAT CCCGGACGAG
CAGGTGACGC CGGCCGGACA GAATCTAAGC CTCAACGAAA TGAAGACGCT GCTGGAACAC
GCGATCAACG AACTGCCGGG AAACTACCGC ACGGTTTACG TGATGCGGGA GATCGAGCAG
CTAAACACGG CGGAGACGGC GGAATGCCTC GGACTTTCGG TGGAGAACGT GAAGGTGACG
CTGCATCGCG CGCGCGAGCA GCTGAAGACG CAACTGCTGA AGAGCGCGGC GATGCCGGAG
TTGTTCGCGT TCAAGGCGCC GCTGTGCAAT CCGTTCACCG CGCGGGTCAT GGCCCGGGTG
CTGGAAATCT CGCGACGGTG A
 
Protein sequence
MQPDTMTTPI ESPETISDFA VIDEVVRGNR EMFEVLVRRH NQRLFRVGMA CLGRRELVED 
AMQNAYLKAF LHLPRFRRSA AFATWLTRIM VNECRMLLRK QHTVREDEWL EEDHTAIPDE
QVTPAGQNLS LNEMKTLLEH AINELPGNYR TVYVMREIEQ LNTAETAECL GLSVENVKVT
LHRAREQLKT QLLKSAAMPE LFAFKAPLCN PFTARVMARV LEISRR