Gene Oter_3652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_3652 
Symbol 
ID6206593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp4741648 
End bp4742517 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content63% 
IMG OID641693320 
Producthydroxymethylbutenyl pyrophosphate reductase 
Protein accessionYP_001820529 
Protein GI182415463 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.197774 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.740521 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTCC TTCGTGCCAA GAGCGCCGGG TTCTGTTGGG GAGTCGAGCG CGCCATCGAG 
ATCACGCGCG ACTACGCGCA CCAAGGACGG AAGCCCGTCT ACACGGATGG CCCGTTGATC
CACAACCGCC AGATGATGGA GAAGTTGTCC GAGGAGGGCA TCCGCGAGGT CGGCGACTAC
CAGAGCCGCG CGAACATCGC GGTGAACCCC GCCGCCCCGG GCGAGAATCC CGTGATGGTG
GTGCGCGCGC ATGGCATTTC GCCGGAGCGG CGCAACTACC TGAAAAGCCT CGGCATGGAC
TTCAAGGACG CGACGTGTCC CGACGTCGGC ATCATCGCGG GCAAGATCCG GCTGCACGCC
AAGAAAGGCT ACGCGACGAT CATCTTCGGC GACAAAAATC ATCCGGAAGC GATCGGGCTG
TTGGGTTACA CGGAGGGTCG CGGCTACTGC ATCACGAGCA AGGCGGACAT CGATGCGCTG
CCGGCGCTCG AGCGCGTGTG CATGGTTTCC CAATCGACGA TGTTCATGCA CGAATTCGCC
GAGCTCTCCG AATATGCGCG GCAGAAGTTC AAGGAAGTGC TGGTGTTCGA CACGATCTGT
CAGGCGACGA AGGACCGGCA AACCGACGTC GTCGCACTCG CGCGTCAAGG CGCGCAGGCG
ATCGTCGTCA TCGGCGGCCA TCACTCGGCG AACACGGTGA AACTGGCCTC GCTCGCGCGG
TTGCAGAACC TGCCCACGTA TCACATCGAA ACCGCCGCCG AGCTTTCGCC GGAGGAGATG
AAAAAGTTCA CCGTGATCGG CGTCACCGCC GGCGCCTCGA CGCCCGAATT CCTGATCAGC
GAAGTCTGCG CGAAGCTCGA GGCGTTGTGA
 
Protein sequence
MKVLRAKSAG FCWGVERAIE ITRDYAHQGR KPVYTDGPLI HNRQMMEKLS EEGIREVGDY 
QSRANIAVNP AAPGENPVMV VRAHGISPER RNYLKSLGMD FKDATCPDVG IIAGKIRLHA
KKGYATIIFG DKNHPEAIGL LGYTEGRGYC ITSKADIDAL PALERVCMVS QSTMFMHEFA
ELSEYARQKF KEVLVFDTIC QATKDRQTDV VALARQGAQA IVVIGGHHSA NTVKLASLAR
LQNLPTYHIE TAAELSPEEM KKFTVIGVTA GASTPEFLIS EVCAKLEAL