| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3464 |
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| Symbol | |
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| ID | 6205181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4505305 |
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| End bp | 4507854 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641693130 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001820341 |
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| Protein GI | 182415275 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.068989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGAC GCAATCTCTG GAAGCTGCTG CTGACCCTTG CCATGTTGGG CTGGGCCATC
GCCACGCTCA TCCCGCTGCA AGACCAGCCC TTCGTCGACT ACGTCAAGGC TCACGTGACC
GCCAAGCCGG CGGAGTTCAA CGCGCTCCTG GCCGAGGCGT CGGCCATGAA GCGCGAGGGC
CGCGTGCTCA GCGAGTTCGT CGCCCTCAAG CAGATCGGCA AGGACCGCCG GCTCGATCTC
ACGCAGTATT TCCCCGACAT CCGGATCGAG TCGAACCTCA CGAACGTCGA AAAACGCAAC
GAGATCCTGC TGGCTGAGCT GCTGCGCCGC TCGAAGAGCC GGCTGCCGCT CGGCCTCGAT
CTTGCCGGCG GCGTGGCGTT CACCCTCGAG GCCGTGCAAC GGCCGGGCGA CACCGCCGAC
GAGCGCGAGC GCGCTGAGAA GCTCGACAAG GCGATCGAGA TCATCAGCAC GCGCATCAAC
GCCTTTGGCG TCGCCGAGCC GCTGATCCGC AAGGTCGGCA ACAACCGGAT CGAGGTGCAG
CTGCCGGGCG TCAACACCCG CGACAACCCC GAGATCGTCG ACCAGGTGAA GGCGCCGGCG
CGGCTCGATT TCCGCATCGT GCATCCGACG CTGACCCCCG CGCCGGGCGT CGAGACGCCG
CCGGGCTACG AGATCATGTC GCTCGACTAC GAGGGCCGCC GTGGCGAGAC CGGCAGCGAG
GAGCTCTTCA TCAAGCGCGT GCCGGAGATG ACCGGCGAAG CGATCTCAAA TTCCTTCGCG
CGGCCCGACA TGTACGGCAA GCCGGAGGTG ATCCTGCAGT TCACCAACGA GGGCAAGCAG
CGCTTCGCCG AGGTCACCCG GCAGATCGCC GAGGGCGGCC GGCAGGCGGG CCGGCTGGGC
CGGCTGGCGA TCGTGCTCGA CAACAAGCTC TACTCCGCAC CGACGGTGCG CGAGGAAATC
AACAGCGAAT CCGCCCAGAT CACCGGCTCG TTCACCGATC GCGAGGCGCT GAACCTGGCG
AACGTGCTCA ACAACCCGCT CGACGTCGAA CTGCAGGTCA AGGAGCAGTA CGAGGTCGGC
CCGACGATGG CCGAGAGCGC CGTGGAAAGC GGCAAGCGCG CCACCTATAT CGGCGTCGGT
CTCGTGGCGG TCTTCATGAT CGGCTACTAC ACGATCGCGG GCTTCGTCGC CGTGTTGAGC
GTGACGCTGA ACATCCTCGT GGTGCTCGGC GTGCTGGCCA GCCTGGGGGC GACGCTCACG
ATGCCCGGCA TCGCCGGCAT CGTGCTGACC GTCGGCATGG CGGTCGACGC ACACATCCTG
ATCTTCGAGC GCATGCGCGA GGAATTGTCC GCCGGCAAAT CGCTCGTGGC AGCCTTCCAT
TCCGGCCACG ACCGGGCGTT CACCACCATC GTCGACGCCA ACCTGACGAC GCTGATCACC
TCGGTGCTCA TGATCGTCTT TGGCAACGGC CCTGTGAAGG GCTTCGGCGT CACGATCACG
ATCGGCATCT TCTCGACGCT GTTCACCGCG CTGCTCGTCA GCCAGATGCT GCTCGATTTC
CTGATCTCGT CCGGCCGGAT GAAGAAGATG CTCATGATGA GCTTCCTCCA GCCGCCGGCC
ATCGACTTCG TCAAATACGG CAAACGCGCC TTCATCGCCT CCTGGATCGT GGTCGCCATC
GGCCTGTCGG CCATCGCCTT CCGCGGCAGC AGCATCTACG GCATCGATTT CGCCGGTGGC
GACGTGATCA ACCTGGCGTT CAAGCAGGAG GTGAACATCG AGCAGGTGCA ACGCACGCTC
GACAACGCGA AGCTCGGCGA GACGCTGCCG TTCTACCAAA GCGAGATCGG CGGCGGCCAG
CGGTTGCTCA ACCTGCAGAC CGAGGCGGGC AAGGGCCAGG CAGCCGTCGC GACGTTGAAA
TCCGCTTATC CGAACGCTGG ATTCGAGGTG GCCGGCAGCA CGATCGTCGG TCCGTCGATG
GGCCGCGAGA TTCAGTTGAA CGCGCTGCTC TCGATCGGAC TTTCGATCCT GGGCATCATG
CTCTACGTCG CGTTCCGGTT CGAGATCGGC TACGGCATCG GCGCCGTCGT CTCGACGATT
CACGACGTGC TGCTGACAAT CGGCATCTTC GTGCTGAGCG GCCGGCAGTT CTCGGCGCCC
ATGGTCGGCG CCATCCTGCT GATCGTCGGC TACTCGATCA ACGACACCAT CGTCGTGTTC
GACCGCATTC GCGAGGAGTT GAAGAACAAC CCGAACACGA ATCTGCGCGA CGTCATCAAT
CTCGCGACCT CCCGCGTCTT CGCGCGGTCG ATCCTGACCA GCTTGACGAC CTTCCTCGCC
GCCCTGGCGC TGTATTTGTT CGGCGGTGGC GTGGTCAACG ACCTCTCCTT CACCTTCCTC
GTCGGCATTG TCACGGGCAC GTTCTCGTCG CTGTTCATCG CCACGCCCAT CTTCTACTGG
TGGCACAAGG GCGATCGGAA GCACGTCGAA GCGCACCACG ACATCGCGCC GAAATACGAG
TGGACCGGCT CGAGCAAGGC TTCGCACTGA
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| Protein sequence | MFRRNLWKLL LTLAMLGWAI ATLIPLQDQP FVDYVKAHVT AKPAEFNALL AEASAMKREG
RVLSEFVALK QIGKDRRLDL TQYFPDIRIE SNLTNVEKRN EILLAELLRR SKSRLPLGLD
LAGGVAFTLE AVQRPGDTAD ERERAEKLDK AIEIISTRIN AFGVAEPLIR KVGNNRIEVQ
LPGVNTRDNP EIVDQVKAPA RLDFRIVHPT LTPAPGVETP PGYEIMSLDY EGRRGETGSE
ELFIKRVPEM TGEAISNSFA RPDMYGKPEV ILQFTNEGKQ RFAEVTRQIA EGGRQAGRLG
RLAIVLDNKL YSAPTVREEI NSESAQITGS FTDREALNLA NVLNNPLDVE LQVKEQYEVG
PTMAESAVES GKRATYIGVG LVAVFMIGYY TIAGFVAVLS VTLNILVVLG VLASLGATLT
MPGIAGIVLT VGMAVDAHIL IFERMREELS AGKSLVAAFH SGHDRAFTTI VDANLTTLIT
SVLMIVFGNG PVKGFGVTIT IGIFSTLFTA LLVSQMLLDF LISSGRMKKM LMMSFLQPPA
IDFVKYGKRA FIASWIVVAI GLSAIAFRGS SIYGIDFAGG DVINLAFKQE VNIEQVQRTL
DNAKLGETLP FYQSEIGGGQ RLLNLQTEAG KGQAAVATLK SAYPNAGFEV AGSTIVGPSM
GREIQLNALL SIGLSILGIM LYVAFRFEIG YGIGAVVSTI HDVLLTIGIF VLSGRQFSAP
MVGAILLIVG YSINDTIVVF DRIREELKNN PNTNLRDVIN LATSRVFARS ILTSLTTFLA
ALALYLFGGG VVNDLSFTFL VGIVTGTFSS LFIATPIFYW WHKGDRKHVE AHHDIAPKYE
WTGSSKASH
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