| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3331 |
|---|
| Symbol | |
|---|
| ID | 6207813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4354814 |
|---|
| End bp | 4356619 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641692997 |
|---|
| Product | glycoside hydrolase 15-related |
|---|
| Protein accession | YP_001820209 |
|---|
| Protein GI | 182415143 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.487654 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCG AGTGCTACGG ATTCATCGGC GACCTGCACA CCTGCGCGCT CGTCGGGGTC
AACGGTTCCG TCGACTGGCT GTGCCTGCCG CGCGCCGACT CGCAGGCAGT GTTTGCAGCG
TTGCTGGGGG ACGAGAACAA CGGCTGCTGG CGGATCGCGC CGCGCGAGCC CGCGATCCGC
TCGGGACAGA GTTATCAGCC TGACACGCTC GTGCTCGAAA CCGAATTCGA GACTTCCTCG
GGGGTGGTGC GCGTGATCGA CTGCATGCCG CCCGGCCGCT CGCGACGCGA CCTCGTGCGC
GTGGTGCAGG GCGTTCGGGG CTCGGTGCCG ATGGCGCTGC GGCTGGTGAT CCGGATGGAT
TACGGCCGCA CGATTCCCTG GGTGCGACAT GCCGACGGCG GCGGGATGAT GGCGGTGGCC
GGACCGGACG CGGTGGTGTT GCGCACGAAT GTGCCGACGC ACGGCGAGCA GTTGTCCACG
GTGGCAGAGT TCGTGGTGCA CGAAGGCGAC AAAGTGCCAT TCGTGCTGAG CTGGTTTCCC
TCGCACACGC CGCAGCCGGA TCCGATCGAT CCGCTGCGCG CGCTCGAGCG CACGCAACTG
TTCTGGCGCG AGTGGGTGTC GCGCTGCACG TATCGCGGCG AATGGCGCGA CGCGGTGGTC
CGGTCGTTGA TCACGTTGAA AGGACTGACC TACGCGCCGA CGGGCGGGAT CCTCGCCGCG
GCGACCACTT CGCTGCCGGA GCAGATCGGC GGCGTGCGCA ACTGGGACTA CCGCTACTGC
TGGCTGCGCG ACGCGACGTT CACGCTGTAT TCGTTCATGG AGGCGGGCTA CACCGAGGAG
GCGGCGGCGT GGGGCGACTG GCTGCTGCGC GCGGTGGCGG GCGATCCCGC GCAGCTCCAG
ATCATGTTTG GCGCGGCGGG CGAGCGCACG CTGACGGAGC TGGAGCTCCC ACATCTTGCC
GGCTTCGAAG GTTCGCGGCC GGTGCGGATC GGCAACGCCG CGTCCGCGCA GTTCCAGTTG
GACATCTACG GGGAGGTGCT GGATGCGATG CACCTCGCGC GCAAAGTCGG GCTGAGGCTG
GGCCCGCACT CGTGGAGCCT GCAGCGGCAC CTCGTGGATT TCGTGGTTAA AAACTGGCGC
GAACCCGACG AGGGCATTTG GGAAATCCGC GGGCCGCGGC GGCATTTCAC CCATTCGAAG
GTGATGGCGT GGGTGGCCCT CGACCGCGCG GTGAAGGCGA TCGAGCAGTT CGACCTGCCG
GGCGACCTTG AAGGCTGGAG CCGGGCGCGG GAGGAGATCC ACACCGACGT CTGCGAACAC
GGATACAACA AGCAGCGGCA GGCGTTCACG CAGTACTACG GCGCCGATTT GCTGGATGCG
AGTTTGCTGA TGATGCCGCT GGTCGGGTTC CTGCCGGCGC GTGATCCGCG CGTCGTCGGA
ACGGTCGAGG CCATCCAGCG CGAGCTCGTG CAGGACGGGC TGGTCTATCG CTATCATCCG
CTGCGCTCGG GGAACGTCGA CGGATTACCG CCAGGCGAGG GGGCGTTTTT GCCGTGTTCA
TTCTGGCTGG TGGATTGCCT GAAGCTGATC GGTCGGGAGC GGGAGGCCCA CGAGCTGTTT
GAGCGGCTGC TGGGCCTGCG CAACGGGCTC GGGCTGCTCG CGGAGGAATA CGATCCGGGG
CATCGCCGGC TGGTCGGCAA TTTTCCGCAG GCATTCTCGC ACATCGGGCT GATCAACTCG
GCGCAGAATC TCTCGCGGGG GGCGGTGGGG CCCGCGGCGG GCCGTAGTTC CGAGTCGGAA
CATTGA
|
|---|
| Protein sequence | MNLECYGFIG DLHTCALVGV NGSVDWLCLP RADSQAVFAA LLGDENNGCW RIAPREPAIR
SGQSYQPDTL VLETEFETSS GVVRVIDCMP PGRSRRDLVR VVQGVRGSVP MALRLVIRMD
YGRTIPWVRH ADGGGMMAVA GPDAVVLRTN VPTHGEQLST VAEFVVHEGD KVPFVLSWFP
SHTPQPDPID PLRALERTQL FWREWVSRCT YRGEWRDAVV RSLITLKGLT YAPTGGILAA
ATTSLPEQIG GVRNWDYRYC WLRDATFTLY SFMEAGYTEE AAAWGDWLLR AVAGDPAQLQ
IMFGAAGERT LTELELPHLA GFEGSRPVRI GNAASAQFQL DIYGEVLDAM HLARKVGLRL
GPHSWSLQRH LVDFVVKNWR EPDEGIWEIR GPRRHFTHSK VMAWVALDRA VKAIEQFDLP
GDLEGWSRAR EEIHTDVCEH GYNKQRQAFT QYYGADLLDA SLLMMPLVGF LPARDPRVVG
TVEAIQRELV QDGLVYRYHP LRSGNVDGLP PGEGAFLPCS FWLVDCLKLI GREREAHELF
ERLLGLRNGL GLLAEEYDPG HRRLVGNFPQ AFSHIGLINS AQNLSRGAVG PAAGRSSESE
H
|
|---|
| |