| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3163 |
|---|
| Symbol | |
|---|
| ID | 6206320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4113627 |
|---|
| End bp | 4116215 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641692829 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001820043 |
|---|
| Protein GI | 182414977 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.111664 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.813914 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGCGA TGCCGATCAC CGGGCCCGCG GTGGCGGGAT TCGAGATGTA TGATCAGCGC
CTCCCGGCGC TGCTCGAAAA ATGGCATATT CCGGGCGCAA CCGTGGCGGT CGCGGTGGAC
GGCCGGATCA TCTTCGCGCG GGGCTACGGT TTCGCGGACC CTGAGGCCGG CCGGCCGATG
CAGCCGGACA CGCGCATGCG GATCGGGAGC ATTTCGAAAA TGCTGACGGC GGCGGCGGTA
TTGAAGCTGG TGGAGGACGG CCGGCTGTCG CTGCAGGATC GGGCCTTTCT GGGCTGGCCG
ACGCCGACGT ACGCCGGCGC GGCGCGTGAT CCGCGGCTCG ATCGAATCAC GGTCGCGCAC
CTGCTGAGCC ACACGGCGGG CTGGATTTCG AGCGAGGCGG AGATCCCGTT TTCAGGCGGG
CAGCGTGGTT TCAACCCCGT TTACCTCCAA CGCCAGATCG CGGAGATTCT TGGGCAACCT
CCGCCGGCTT CCGCGGAAAC CATCGCGCAG GTGGTTGTCG GACAGCCGCT GCAAGCCGAG
CCGGGAAGAG TCTACGCCTA CACGAATACC GGTTATATCG TGCTTGGGCG GCTCATCGAA
CGTGCCACCG GCCAGACCTA CGAGGAAGCC GTGCGGACGA TCCTCGGCCG CGTCGGAATC
TCCGGACTGA GGATCGGTGA CACCCGGCGC AGTGAGCTCG AAGACGACGA AGCCGTGTAT
GTCGATTATC CCGGCGCGGC GTTGATGGAG TCGCATATCG GTGACACCGG GCTGGTGCCG
GAGCCGTATG CCTATTCGCT GCACTCGTGG GACGCCTCGG GCGGCTGGAC GATGTCGGCG
ATCGAAGGCG TTCGGTTTCT GCTCGCGCTG GAGGGCGCCG GTGACACGCC GCGGCTGCTG
CGATCGGATT CCGTCACCGC GATGCGTACC GAACAGTATC CCGGCTCCGC TTACGGGTAT
GGTTGGTGCA CGAGCAACCA TCCTTTCAGC AGCGACGGGG GACACAATGG CGGCATGGCG
GGCACGCTGG CGGAACTCGT CCGTTCGAGC GATGGACGGC GTCATACCAT GGTGATATTC
AACAGCCGGC CGGCCGACGT GGATGGAATC CTCGCCGAAT CGGCGCAGGT CCTGCACTCG
GTCGACAGCC GGCCCGCGAC GTTCGCGCAT GATTTCACGA CGACCACGCT GGGGTGGGAG
GCGTGGCAGC AGCGCACTCT CGCCAGTGCG GCTGCCGAGC CGCTGGACGA TCCGGACCAC
GACGGGGTGA CGAACCTGCT GGAGTATGCC GCCGGTCTCG ATCCGACGCG GCGCGACTCG
CCATCGCCGG CTTCGCTTAC GATCGGATCG GACGGCGTTG CAGCGCTGAC GTTCCAGCGG
CTGATTCTGG AGCAACCCTT GGAGTGGAAG ATTGAGAGCA GTGCCGATGG GCGGAACTGG
AGCGCGATCG AAAGCGTGGG CGCGCCTGCG GGGCTCACTC CCGACGGCAC GTTGTCGATG
AGCGTTCGTG TTCCGGGTGC GGCGCGCGCG CGGCTGCTTG TCCGCCAGCG ATCGAGCGGG
GCGGAAGCGG TCTTCGAGCC TGTGCTGTCA CCGCGAATGG TTGCGTTGAC CGCGGGGGAA
AGTACCACGC TTTCGGCCGT GGTGCCGCCG GACACGCCCT TGCAGTGGCG GCGGAATGGC
GAGGTCATTC CGGGAGCAAC GACGTCCAAC CTGACACTGA GAAATGTTTG GTCTGCGGAC
GCGGGTATCT ATACCGTGGA CATCGGCGGC GACTCGCCAT CCACCTGCCT GGCCGCGATC
GTGGGCATTC GTTCCGTCGC GAAGGTCATG GGTGACGGGA TCATCGTTGG CAGCGATGTT
CGTCATCCGA ACGGCAACAT CTACGATCAG GTGCTGCTCA CCGGTGCGGC CGCGACGGTC
ACGGCCGATC CGGCGCAGGT GACGCGGGTC TCATTCGTTG ATCTGAACGA CGATATCGTG
CAGGTGGAGT TTTCCGGATC CGGCAGCCTG ACGGTCGCGC TTGCCGGCGC ATCCGAGCCC
GCACTGCCGC GACACTACCA TCAGGACATC CGCTACGTAA AAGGTCACGC CACGCTCGTG
ATTGCGGACG CCGACGAGAC GACGAACGTC TCGGCTTTCT CGGTCGGGCG CGGGAACGCG
GTGAACCAAG CGCTGTTCAA GGCGGACGTC GCCTACGATG GGATCGCAGA TCTCGCGGCG
CTCGCGCTTC ATGGCTCCGC CGGCAAGGCG GCGGGGATCT TCATGGGCAA CGCGCACCTG
TTTGCGGCTT CCGGCGTCAC GGGAATTTTC GCCGACGGCA TCGCGGTCTC GGGTCCGGCC
CGGCTCGGGA ACATCAGCGC GTATGATCGG GCGACACCGA TGCTGGTGTT CGGCTCGCTG
GCCGACCTGG CGATCACGGG CGGCGATCTG AAACAGGAGA ACGCACGGCC GGTGCAGGTG
CGAGGTCTGG GCGCGGTGTA TCTCACGGCT GGCGGAAAAT CCGATGGCAC GGCGCTGCCG
GCCCAGCCGA ATCAAGCCAG ATTTGAGCTC AATGGCGCGG ACGTGACGCC CTGGCTCGTC
GCCCCGTGA
|
|---|
| Protein sequence | MVAMPITGPA VAGFEMYDQR LPALLEKWHI PGATVAVAVD GRIIFARGYG FADPEAGRPM
QPDTRMRIGS ISKMLTAAAV LKLVEDGRLS LQDRAFLGWP TPTYAGAARD PRLDRITVAH
LLSHTAGWIS SEAEIPFSGG QRGFNPVYLQ RQIAEILGQP PPASAETIAQ VVVGQPLQAE
PGRVYAYTNT GYIVLGRLIE RATGQTYEEA VRTILGRVGI SGLRIGDTRR SELEDDEAVY
VDYPGAALME SHIGDTGLVP EPYAYSLHSW DASGGWTMSA IEGVRFLLAL EGAGDTPRLL
RSDSVTAMRT EQYPGSAYGY GWCTSNHPFS SDGGHNGGMA GTLAELVRSS DGRRHTMVIF
NSRPADVDGI LAESAQVLHS VDSRPATFAH DFTTTTLGWE AWQQRTLASA AAEPLDDPDH
DGVTNLLEYA AGLDPTRRDS PSPASLTIGS DGVAALTFQR LILEQPLEWK IESSADGRNW
SAIESVGAPA GLTPDGTLSM SVRVPGAARA RLLVRQRSSG AEAVFEPVLS PRMVALTAGE
STTLSAVVPP DTPLQWRRNG EVIPGATTSN LTLRNVWSAD AGIYTVDIGG DSPSTCLAAI
VGIRSVAKVM GDGIIVGSDV RHPNGNIYDQ VLLTGAAATV TADPAQVTRV SFVDLNDDIV
QVEFSGSGSL TVALAGASEP ALPRHYHQDI RYVKGHATLV IADADETTNV SAFSVGRGNA
VNQALFKADV AYDGIADLAA LALHGSAGKA AGIFMGNAHL FAASGVTGIF ADGIAVSGPA
RLGNISAYDR ATPMLVFGSL ADLAITGGDL KQENARPVQV RGLGAVYLTA GGKSDGTALP
AQPNQARFEL NGADVTPWLV AP
|
|---|
| |