| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3148 |
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| Symbol | |
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| ID | 6204888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4091265 |
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| End bp | 4094318 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641692814 |
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| Product | DNA ligase I, ATP-dependent Dnl1 |
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| Protein accession | YP_001820028 |
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| Protein GI | 182414962 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[L] Replication, recombination and repair |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing
[COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.331414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.459978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTGGG ACGTCAAGTT CAGTCATGGT CTTTACCTGC CTCAGCTCGG CTGGTGGCTC
GACGCGCATT TCCCCCAAAA ACGCTCGTTT GTCTCGCACG CGCATTCCGA TCACACCGCG
ACGCACGACG AGATCCTCTG CTCCGCCGGT ACCGCGGCGT TGATGCGTGC ACGGCTGGAT
GCGAAACGCA TCGAGCACGT GCTGCCGTTC GGCCAGACCG AGCAACTCAC GGCCGACTGC
GGCGTCACGT TGCACCCCGC CGGCCACATT TTCGGATCCG CCCAGTGCCT GCTCGAGCAT
GGCGAACACG GCTCGCTGCT CTACACCGGA GACTTCAAAC TGCGCCGCGG CCGCTCCGCG
GAACCTTGCG CCACGCCGCA CGCCGAGCTC GTGATCATGG AGACGACGTT CGGCCGACCG
CACTACGTCT TTCCTCCGAC CGCGCAGGTG CTGAACGACA TCGCCACGTT CTGCCACGAA
ACGATCGCCG ACGACGGCGT GCCGGTGCTG TTCGGCTACA GCCTCGGGAA AAGCCAGGAA
CTGCTCTGCA GCCTGGAGGA GTCGCAGCTG CCGGTGATGC TGCATCCACA GACGCACAAA
CTCACGCGCG TTTACGAGCA GTTCGGCATC GCCTTTCCAC CGTATCGCGA ATTCGACCTC
GCCACGGTGA GGGGTCATGT CGTGATCTGC CCGCCGCAAT CCCGCGAGTC CGCGTTCGTG
CGGCGAATCC CCGGACACCG CACGGCGATG ATCACCGGCT GGGCCATGGA TCCGGGCGCG
ATCTATCGCT ACCAATGCGA CGCGGCGTTT CCGCTGTCGG ATCACGCCGA CTATCAGGAT
CTTCTGCGAT TCGTCGAGGC GGTGAATCCG CAACGCGTGC TCACGCTGCA CGGTTTCGCC
ACGGAGTTTG CGCAAACGCT GCGCGAGCGC GGGCTTGAGG CGTGGGCGAT CGGCGAGGAC
AACCAGCTGG AGCTGGGGAT TCGTTCGTCG CCGCCGCAGG TTCGAGCTGG AGACGCGACG
CCCTCGTCGC GTTCATCCGG CGACGCGGGC GTCGCCGCTC CAGCCTGCGC CACGCCCCTT
CACGCACCGG ATTCGTTCGC GCGTTTCGTC GCGGCGGCCG ACGCCGTCAA GGCCACGCCG
AAGAAATTGG AAAAGATCGC CGTGCTCCGC GATTACCTCG CCGCGTTGAC GCCGCCGGAC
ATGGGCACCG CGGCGACGTT TCTCACCGGC CGCGCGTTTC CGCAGCGCGA TCCGCGCAAC
CTCACCCTCG GTTGGTCGGT GATCAAACGT GCCGTGCTCG AAGTCGCGGG CGTCACCGAA
GCCGACTACC GCGACGCTTA TCATCGGTTC GCCGACACCG GCGACGCCGC CGGTGCCGTG
CTGGCGCAGC GGAGTCTCCG GCCTGGAGAC GCGACGCCCT CGTCGCGTCC GGAAATTCTC
GGTGTAGCCG GGGTCGCCGA CCCCGGACCG GCCGCATCGA GGCCGGCTGC CACAAGCGCT
CCCACCACCT GTTCGCTCGC CGACATGGCG TTGTTTTTCG AACGCGCCGC GGCTGCGCGC
GGCCCGGCGG CCAAACTGGA CCTGCTCCGC GAGCGACTCG CGCTGATTAC GCCGGACGAG
GCGCGTTACC TAATCAAGAT CATCACGGGC GACCTGCGGA TCGGGCTCAA AGAAGGACTC
GTCGAAGAAG CGCTCGCCGC GGCGGCTGGT CAGCCGCTCG AGGCCGTGCG CGAGGCGGCC
ATGCTCTGCG GCGACATCGC CGCCGTGGCT CGAGCGGCCC GGACGGACAC GCTCGCGGAA
ATCCAGCTCA CTGTTTTCAA TCCGCTGCAG TTCATGCTCG CGAGTCCCGA GCCCACTGCC
GAGGCGATCG TCGACCGGTT CGCAGCGCAG CGCACCGCGG AAGCCGCTGC CATTGTAGCC
GGGGTCGGTG ACCCCGGCCC GGGCTCATCG AGCCCGGCTA CAGCTGACGC AGCGCCCGCG
CTCGCACGCA TCTGGCTCGA GGAGAAATAC GACGGGATTC GCTGTCAGCT CCACAAATCG
GGCGGACGCG TGGAGCTCTA CTCGCGCGAT CTGAACGTGA TCACCGAGCA GTTTCCCGAC
TTGGCGCGCG CCGCTCTGGC GCTGCCGCAC GATTTTATCG GCGATGGCGA ATTGCTCGCG
TGGCGCGACG GCCGGGCACT GCCGTTCGCC GAACTGCAGA AACGTCTCGG CCGAAAAGGT
GGCGACGATT TCTTCCTCGG TGCGGAGATT CCGGTTTCCA TTTCGTTCTA CGATCTCCTC
TGGCTCGATG GCCGCAGTTT GTTGAAGGAA CCGCTGCGCG AACGGCGTGC GTTGCTCGAA
CGTCTGCTGC ATGGAGACGC GACGCCCTCG TCGCGTCCCG ACGGCGACGA GGGCGTCGCC
GCTCCAGCCC TTCAGCCCGC AACTCTCAAC CCTCAACTCT CAACCAAATT TTCCCTCGCG
CCCGTCACCT TCGCGCACAC CGCATCCGAC ATCGAGGCGG CTTTCCTCGC GGCGCGCCAG
CGCGGCAACG AGGGGCTGAT GGCGAAGGAT CCCGCCAGCG GCTACACGCC CGGCCGGCGC
GGACTCGCCT GGCTGAAGCT GAAAAAAGCC TATGCCACAC TCGACGTGGT CGTGGTCGGC
GTGGAATACG GCCATGGCAA GCGCCGCGAT GTGCTGAGTG ACTACACGTT CGCAATCCGC
GACGAGGAGC ACGACAACCA GCTGCTCACC GTGGGCAAGG CCTACTCCGG CCTCACCGAC
GTCGAAATCG CGCAGCTCAC GCAGCATTTC CTCGAGCACA CGCTCGAGGT GCACGGACGC
TACCGCGTCG TCGTGCCGGA TACCGTGATC GAAGTGGCCT TCGATACGAT CCAGCCGAGC
AGCCGGCATC AAAGTGGATT CGCGTTGCGC TTTCCGCGGA TCGCACGGAT CCGCACCGAC
AAGACGCCCG CGGAAATCGA CACGCTCGCG ACGTGCCGGA AGCTCGCGGC CGCCGCCGGG
AGCGGGGGCA TTGCTGCAGT GGGGGCGCGG CCGCCCCCGG CCGCATCGGA TTGA
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| Protein sequence | MPWDVKFSHG LYLPQLGWWL DAHFPQKRSF VSHAHSDHTA THDEILCSAG TAALMRARLD
AKRIEHVLPF GQTEQLTADC GVTLHPAGHI FGSAQCLLEH GEHGSLLYTG DFKLRRGRSA
EPCATPHAEL VIMETTFGRP HYVFPPTAQV LNDIATFCHE TIADDGVPVL FGYSLGKSQE
LLCSLEESQL PVMLHPQTHK LTRVYEQFGI AFPPYREFDL ATVRGHVVIC PPQSRESAFV
RRIPGHRTAM ITGWAMDPGA IYRYQCDAAF PLSDHADYQD LLRFVEAVNP QRVLTLHGFA
TEFAQTLRER GLEAWAIGED NQLELGIRSS PPQVRAGDAT PSSRSSGDAG VAAPACATPL
HAPDSFARFV AAADAVKATP KKLEKIAVLR DYLAALTPPD MGTAATFLTG RAFPQRDPRN
LTLGWSVIKR AVLEVAGVTE ADYRDAYHRF ADTGDAAGAV LAQRSLRPGD ATPSSRPEIL
GVAGVADPGP AASRPAATSA PTTCSLADMA LFFERAAAAR GPAAKLDLLR ERLALITPDE
ARYLIKIITG DLRIGLKEGL VEEALAAAAG QPLEAVREAA MLCGDIAAVA RAARTDTLAE
IQLTVFNPLQ FMLASPEPTA EAIVDRFAAQ RTAEAAAIVA GVGDPGPGSS SPATADAAPA
LARIWLEEKY DGIRCQLHKS GGRVELYSRD LNVITEQFPD LARAALALPH DFIGDGELLA
WRDGRALPFA ELQKRLGRKG GDDFFLGAEI PVSISFYDLL WLDGRSLLKE PLRERRALLE
RLLHGDATPS SRPDGDEGVA APALQPATLN PQLSTKFSLA PVTFAHTASD IEAAFLAARQ
RGNEGLMAKD PASGYTPGRR GLAWLKLKKA YATLDVVVVG VEYGHGKRRD VLSDYTFAIR
DEEHDNQLLT VGKAYSGLTD VEIAQLTQHF LEHTLEVHGR YRVVVPDTVI EVAFDTIQPS
SRHQSGFALR FPRIARIRTD KTPAEIDTLA TCRKLAAAAG SGGIAAVGAR PPPAASD
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