| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3000 |
|---|
| Symbol | |
|---|
| ID | 6204225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3853842 |
|---|
| End bp | 3854930 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641692665 |
|---|
| Product | alanine--glyoxylate transaminase |
|---|
| Protein accession | YP_001819881 |
|---|
| Protein GI | 182414815 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.123854 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACA AACTTTTCAT CCCCGGCCCC ATCGCCGTCT CGGAGAAGAC CCTCCGCGCC
ATGTCGCAGC CCATGATCGG GCATCGCAGC ACGGACTTCG TTGCGCTCTA TCAGTCCATC
CAACCGGAGT TGCAGGCTCT GTTCTACACC AAGGATCCGG TCTACCTCTC GACCAGCAGC
GCGTGGGGCG TCATGGAAGG CGCCGTCCGA AACGTCACGC GCAAGAAGGT GCTGAACTGC
ATGAACGGCG CGTTCTCGGA CAAGTGGAAC GACGTCGCGC AGCGCTGCGG CTTCGCCGCC
GGCGCGCTGA AGTTCGATTG GGGCCAACCG GTCGATCCCG AGGCGGTGCG GCGCGAACTC
GCGACCGGCG CCTACGACGC GATCACGCTC ATCCACAACG AAACCTCGTG CGGCTGCATG
AGCGATCTGC CGGCGCTGAT GGCCGTGATC CGCCAGTTCC CGGACGTGAT CTCGATCGTC
GACACCGTCA GCTCGTTCAG CGGAGTGCCG ATTAAAAAGG ACGAGCTCGG CATCGACGTG
CTCATCACCG GCTCGCAGAA GGCGCTCGCG ATGCCGCCGG GGCTGGCGCT GTTCTCGGTC
TCGAAACGCG CGCTCGACCG CGCCGCGTCA CAGCCCGGCC GCGGCTACTA TTTCGATTTC
GTCGAGTTCC AGACGAATCA CGAAAAAGGC ATGACGCCGA GCACGCCCTC GATCGCGCAC
ATCTACGCGC TCAAGTCGAA GCTCGAAGAC ATCAAGGCCG AGGGGGTCGA GAACCGCTAC
GCGCGGCACG CCCGGCTAAA CAAGATGGTC CGCGACCACA TGGCGGCCAA AGGCTTCAAG
CTGTTCCCGA AGGAGGGCTA CGGCTCGGTC ACGCTCAACT GCTTCGCGAA CACGCTGAAC
ATCGATCTCG CCGCGTTGAA CAAGACGCTG AAATCGAAGC ACCACCTCGT GATCGATGGC
GGCTACGGCA AGCTGAAGGG AAAGACCTTC CGGATCTCCA ACATGGGCGA TGAGACCGAC
GAGACGATCG CCGCGATGCT GAAGTCCTTC GACGCCGCTT TCGCCGAGAC GCCGAAGCTC
GCGAGCTGA
|
|---|
| Protein sequence | MSYKLFIPGP IAVSEKTLRA MSQPMIGHRS TDFVALYQSI QPELQALFYT KDPVYLSTSS
AWGVMEGAVR NVTRKKVLNC MNGAFSDKWN DVAQRCGFAA GALKFDWGQP VDPEAVRREL
ATGAYDAITL IHNETSCGCM SDLPALMAVI RQFPDVISIV DTVSSFSGVP IKKDELGIDV
LITGSQKALA MPPGLALFSV SKRALDRAAS QPGRGYYFDF VEFQTNHEKG MTPSTPSIAH
IYALKSKLED IKAEGVENRY ARHARLNKMV RDHMAAKGFK LFPKEGYGSV TLNCFANTLN
IDLAALNKTL KSKHHLVIDG GYGKLKGKTF RISNMGDETD ETIAAMLKSF DAAFAETPKL
AS
|
|---|
| |