| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2737 |
|---|
| Symbol | |
|---|
| ID | 6204998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3504308 |
|---|
| End bp | 3505456 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641692398 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_001819618 |
|---|
| Protein GI | 182414552 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.115785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00850953 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCGC CGAATTCCCG CCTGCCGTTG CGGTGCTGGG CCGAGATCGA TCTGGCCGCA
CTCGAACGCA ACCTCCGCCT CATCCGCGCC TCGCTGCCGG CGCACATGCG CTACGTGGCC
GTGGTGAAAG CCGATGCCTA CGGCCACGGC CTGCCGCAAA CCGCGGCGCG GCTCATGCAC
GCCGGCGCGG ATCTCTTCGC CGTCGCCACC CTCGCTGAGG CCGCGACCGT GCGCGAACTC
GGCCCCGGCT GGCCGGTGCT GCTGCTCAGC CCACTCCTGC CGGAAGAGGA TCGCTACCTG
GCGGAATACG ACCTGACCGC CACGGTCTCG AGTATCGAGG AAGTGGATCG GTTCGAGGCG
GCGGGCCGCG TCGCGGGTCG CGTCATTTCC GTTCACCTGA AAATCGACAC CGGCATGGGC
CGGCTCGGCG TATGGCACGA GCAGACCGCA TCGGTGTACG AACACCTCGC ACGGGCGCCC
CACCTCCGCC TCGCCGGCGT GTTCACTCAT TTCGCCGCCC CGGAGGAAGC CGCATTCACG
TCGGAGCAAC GGCGACGTTT TCTCGCCGCG CTCGCCGCCT GCCAGGGCAT CCCGCTCGAT
TCGATTTTCG TCCACGCCGA CAACAGCGCG GGCATCGAAA CCATGTCCAG CGCGACTCCC
TTCAACGCGG TGCGCATCGG CCTCCTGCAG TTCGGCATTC TGCCGCATCC GAACTCGCTG
CTTTCAGAGG TTCACACCGA GCCGGTGTTC TCGTTCCTCA CTCGCGTCGG TTTGGTCAAG
TCGCTTCCAG CCGGATACAC CATCAGCTAC GGCCGTACCT ACACTCTCGG CCGGCCCACC
CGGATCGCGA TCCTTTGCGC GGGCTATGGC GATGGCATCC CGCGCGCGGT CAGCAATCGC
GCGCAGGTTC TCATCCGCGG TACGCGCTGC CCCGTGCTCG GACGCGTGAC CATGGACCAG
ACGATCGTCG ACATCACCGA CGCCGGCGAT GTCCGCTGCG GCGACGAGGC CGTCATCGTA
GGACGACAGG ACCAAGCCGA GATCTCCATC GCCGAATTCT CCACCTGGGC GGATACCATC
CCTTGGGAGA CCCTGTGTTC GATCACGAAG CGCGTGCCGC GCGTTTACCG GACCGTGCTC
GGGACCTAG
|
|---|
| Protein sequence | MNPPNSRLPL RCWAEIDLAA LERNLRLIRA SLPAHMRYVA VVKADAYGHG LPQTAARLMH
AGADLFAVAT LAEAATVREL GPGWPVLLLS PLLPEEDRYL AEYDLTATVS SIEEVDRFEA
AGRVAGRVIS VHLKIDTGMG RLGVWHEQTA SVYEHLARAP HLRLAGVFTH FAAPEEAAFT
SEQRRRFLAA LAACQGIPLD SIFVHADNSA GIETMSSATP FNAVRIGLLQ FGILPHPNSL
LSEVHTEPVF SFLTRVGLVK SLPAGYTISY GRTYTLGRPT RIAILCAGYG DGIPRAVSNR
AQVLIRGTRC PVLGRVTMDQ TIVDITDAGD VRCGDEAVIV GRQDQAEISI AEFSTWADTI
PWETLCSITK RVPRVYRTVL GT
|
|---|
| |