| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2663 |
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| Symbol | |
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| ID | 6205793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 3408174 |
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| End bp | 3410675 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641692323 |
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| Product | VacB/RNase II family 3'-5' exoribonuclease |
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| Protein accession | YP_001819544 |
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| Protein GI | 182414478 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTTC GTGAACGACT GCTGGCATTG CTCAGCGAGC CTACTTACTC CCCCGCCACC
GAGCCCGAGC TGCGCCGCCG GCTCGGTCTG CACAAGAAGC GCCGCGCCGA ACTCGCGCAC
GAACTGCACG TGCTGCTTTC GCAGGGCCGC GCCAAGCGCC TGGGCCAGGA GCGATTCGGG
CCCGCCGACG GACGCGGACG CGACGCCGGC CAGCGCGGTG CGGAACGACC GGGCCGACAC
GCCTCCGCCA AACAGAATCG CTTCGCCACG CCGCCGCGGT CCGAGGCCAC GGTTGTTCCC
GAGGAAATCG GAGAAGAGCT GTCCGCGCGT CGCATCTTCA CGCCGACCGC CCGCAAACTG
ACTCCCGCCG CCACGCGTGC GCCCGCAAAG CCGTCGCCAG CACCGCGCGG GAAAACGAAA
GCGCCGGTGG CAACCAGGCT GCCTCTCGGG CCGGACGAAT ACATCGGCCG GATCCAATTT
CGCGCCGGCG GCTCCGCTTT CGTCGTGCTG GAGGCCACCG GCGGTCGTCC CGCTGACCCG
AGCCAGCCGC CGATCCAGGT CTTCGCCGAG GACACCGACG TCGCGCTCCC GGGCGATCGC
GTCGTCGTGC GCGTGTTCGC CGGTCGTCGC GGCCGTCGGC CGGGCGAGAA AATCGGCGGC
GTCGAGCGCG TGCTCGAACG CGGCCGCGAC ACCGTCGTCG GCGATCTGCG CCGGCGCGGT
CGCGACTACC TCGTGGTGCC TGACGATCCG CGCTTCGTCT ACGAAGTCGC GGTAAGCGAC
CCCGCGCGCT CGGGCGTGAA GCCCGCCCCG CAACCCGGCG ACAAGGTGGT GGTGAAACTC
CACGCTTGGA ATCGCCGGCA CGATCCGCTC ACGGGCGAGA TCGAATCCCG GCTCGGGCGC
ACGCACGAAC CACAGGCCGA GCTGCTGGCG ATTTTCCAAA AATACAATCT CGTGACGACG
TTCCCCGCCG ACGTCGAACG CGAGGCCGCC ACCCTGCCCG ATCGCGTGCA CCCGCGCGAG
CTCGCCGGCC GGCTCGACTA CCGGGAGCAA CCGGTGTTCA CGATCGATCC GGATGACGCG
AAGGATTTCG ACGACGCGCT GTCGTATGAG CCGCTCCACG GCGGCGACGT GCGCGTGGGT
ATCCACATTG CCGACGTGTC CACCTACGTG CGTCCCGGCA CCGCGCTGGA TCGCGAGGCA
CAGCGGCGCG GCAACTCGAC TTATCTCGTC GGCACGGTGA TCCCGATGCT GCCCGAGAAA
CTCTCCAACG GGCTCTGCTC GCTCGTCGAA GGTCAGGACC GGCTCTGCAA GGCCGTCTTC
CTCACGTTCG CGAAAAATGG CCGGTTGAAA GAGACGACGT TCGCCAATAC GGCCATCCGC
AGCCGAAAAC GCCTCACCTA CAAGCAGGCC TACGCGCTGA TGTTCGAGCA CGATCTCGAT
CGGATCCGCG CGCTGCCGCT GCCGCCCAAA CACCAGACCG GCTCCACCGG CCGCGCGCTC
AGCGCGCTGA GCGACGCAGA GCTCGTCGAT CTGCAATCAT GGGTCCGCGC CCTTTGGAAA
ATCGCCAGCC GGCTCCGGCA CGACCGGATG GCGCACGGCA GTCTCGATCT CGACATGCCG
GAGACGAAGA TCTTCGTCGA CGAACAGGGC TACGCCGACC GACTCGAGAA GATCGAGCAC
GACGAGAGCC ATCAGCTGAT CGAGGAGTTC ATGCTCGCGG CCAACGAGGC CCTCGCACGG
CTCACGCGGA CGCATTCGTT GCCCTCGCTC TATCGCGTGC ACGACGAGCC CGATCCGGAC
AAGCTCGACG AGTACCGGCA ACTGCTCGCC ACGTTCGACA TTCACACCGG TGACCTCACC
CGCCGCGAGG AACTGGTGAA ACTGATCCGA ACCCTGAGCA CCCATCCGCA AGGTTACACG
CTGCGCACGC AGCTGCTGCG CAGCCTGCGC AAGGCCGCCT ATCGCGCGAC GGCGGATGGA
CACTTCGGCC TGAACAAAAA GGACTACACC CACTTCACCT CGCCGATCCG CCGCTACGCC
GATCTCGTCG TGCACCGCGT ATTCGATTTC TACCTGGTGA AACACCAAGG CGGCCGGCCG
GCGCACGGCC ACACCAGCTA CAATCTCGGC CACGTGGAGA GCCTTGGCGA ACACCTCAGC
CTCACCGAAA TCAACAGCGC CGAGGCCGAG CGGGAAAGCG TGAAGGTAAA GCTGCTGGAA
TTCTTCGAAC GCGAGCTTGC GAAGAAAAAG AAGACGCCAT TCGCCGCCGT CGTCACCGAC
GTGCGCCAGA ACGGTTTCTT CGTGGAGCTC GTCGAATCGA TGACCTTCGG TTTCGTGCCA
ACGCATACGC TCAGCGACGA CCACTACGTG CTGAACAACG CGGGCACGAT GTTCACCGGC
CGCCGGCACA AGCGCCGCTT CGCCGTCAAC GACCGGATCG AGGTTGTCGT GGAAAAGGTC
GACCGCTACA AACGGCTGAT CGATTTCCGT CCGAAGTTGT AG
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| Protein sequence | MTLRERLLAL LSEPTYSPAT EPELRRRLGL HKKRRAELAH ELHVLLSQGR AKRLGQERFG
PADGRGRDAG QRGAERPGRH ASAKQNRFAT PPRSEATVVP EEIGEELSAR RIFTPTARKL
TPAATRAPAK PSPAPRGKTK APVATRLPLG PDEYIGRIQF RAGGSAFVVL EATGGRPADP
SQPPIQVFAE DTDVALPGDR VVVRVFAGRR GRRPGEKIGG VERVLERGRD TVVGDLRRRG
RDYLVVPDDP RFVYEVAVSD PARSGVKPAP QPGDKVVVKL HAWNRRHDPL TGEIESRLGR
THEPQAELLA IFQKYNLVTT FPADVEREAA TLPDRVHPRE LAGRLDYREQ PVFTIDPDDA
KDFDDALSYE PLHGGDVRVG IHIADVSTYV RPGTALDREA QRRGNSTYLV GTVIPMLPEK
LSNGLCSLVE GQDRLCKAVF LTFAKNGRLK ETTFANTAIR SRKRLTYKQA YALMFEHDLD
RIRALPLPPK HQTGSTGRAL SALSDAELVD LQSWVRALWK IASRLRHDRM AHGSLDLDMP
ETKIFVDEQG YADRLEKIEH DESHQLIEEF MLAANEALAR LTRTHSLPSL YRVHDEPDPD
KLDEYRQLLA TFDIHTGDLT RREELVKLIR TLSTHPQGYT LRTQLLRSLR KAAYRATADG
HFGLNKKDYT HFTSPIRRYA DLVVHRVFDF YLVKHQGGRP AHGHTSYNLG HVESLGEHLS
LTEINSAEAE RESVKVKLLE FFERELAKKK KTPFAAVVTD VRQNGFFVEL VESMTFGFVP
THTLSDDHYV LNNAGTMFTG RRHKRRFAVN DRIEVVVEKV DRYKRLIDFR PKL
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