| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2329 |
|---|
| Symbol | |
|---|
| ID | 6206434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3017639 |
|---|
| End bp | 3018406 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641691984 |
|---|
| Product | LytTR family two component transcriptional regulator |
|---|
| Protein accession | YP_001819211 |
|---|
| Protein GI | 182414145 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0531557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00207881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC TCCGTGTTCT GATCGTCGAC GACGAACCTC TCGCGCGGGA ACGCGTGCGC
GCGCTCCTCG CCGGCGAGCC GACTGCGGAG ATCATCGCGG AATGTGGCAA CGGCCCCGAC
GCCGTCGCGG CCATCAAGCA GCAGCGGCCG GATGTGGTGT TCCTCGACAT GCAGATGCCC
GGTTGCGATG GGCTGAAAGT GGTCGGCGAG TTACCCGCCG ACGACCGGCC CGCGATCGTG
TTCGTCACGG CGCACGACCG TTTTGCGGTC GAGGCATTTA GCGTCCACGC GACCGATTAC
CTGCTCAAAC CTTTCGATCA GGAGCGGCTG CTGCTCGCCT ACAAGCGCGC CGCCGACCAG
ATCCGCGCCC GCCGCGCTGG TGATCTGAAT ACGAAGCTCG AGTCGCTGCT CGCCGACGCC
TCGCCCGCGC CGAAGAAGCC CGGCCGGCTC GCGTTCAAAT CCGATGGCCG CGTCGTCTTC
CTCAAGCCCG AGGACATCGT CTGGGTCGAG GCCGCCGACA ATTACGTGCT GCTGCACCTC
GCGGACGCGC CGCGCTTGAT GCTGCGCGAC ACGTTGTCTT CGCTGGAAGA GCGGCTCGGC
TCGACGGATT TCGTGCGCGT GAACCGCTCC GCCATCGTCC GCGTCGAGCA GGTGAAGGAA
CTGCAGCCCA CGTTCCACGG CGACTACACC GTCGTGCTCC GCGATGGCAC CCGGCTGCCG
CTGAGCCGCA GCTATCGCGG TCAGCTCGAG CGGTTCACGG CCGAGTAG
|
|---|
| Protein sequence | MTKLRVLIVD DEPLARERVR ALLAGEPTAE IIAECGNGPD AVAAIKQQRP DVVFLDMQMP
GCDGLKVVGE LPADDRPAIV FVTAHDRFAV EAFSVHATDY LLKPFDQERL LLAYKRAADQ
IRARRAGDLN TKLESLLADA SPAPKKPGRL AFKSDGRVVF LKPEDIVWVE AADNYVLLHL
ADAPRLMLRD TLSSLEERLG STDFVRVNRS AIVRVEQVKE LQPTFHGDYT VVLRDGTRLP
LSRSYRGQLE RFTAE
|
|---|
| |