| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2026 |
|---|
| Symbol | |
|---|
| ID | 6206029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2605003 |
|---|
| End bp | 2605572 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691676 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_001818909 |
|---|
| Protein GI | 182413843 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0972486 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0903404 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGC AGCGCCTGTT CATCGCCGTT CCGCTGCCGC CAGCCGTACG GGATCTCGTC
GCCTCGCTCA CCGTCCCCCT GCGCGAAGTG CGCTGGACCC GCGATGAACA GCTGCACCTG
ACGCTCCGAT TTCTCGGCGA CACCCCGGTC GAACAGATCG ATCCGCTCTG CGCGCGGCTC
GCTGCCATTC AGGTCGAACC GTTTCTGCTC CCGGTCGAAC GCGTCGGCGC ATTTCCGCCC
AAAGCATCGC CGCGCGTGAT CTGGGTCGGC GTCGGCTCGG GCCATCCACG GCTGCATCAG
TTGCGCCAGA AAATCGACGA CGCCGTGCTC GCGTGCGGGC TGGACGCGGA TCTGCGCACG
TTTCATCCGC ACATCACGCT GGGTCGCTGT CAGGACGGCG CACGCAACGG CGTCCAGCAA
TGGCTGCGGC ACCACGCCGA TTTCGCCGGC CCTTCGTTTC GGGTGGACGC CTTCGAGCTC
TACGCGAGCG AACTCCATTC CGCCGGAGCC ATCCACCACC TGCGGCAACG CTTCCCGCTC
GGCTCCGGTT CCACCCCGCC CGCCCCATGA
|
|---|
| Protein sequence | MDTQRLFIAV PLPPAVRDLV ASLTVPLREV RWTRDEQLHL TLRFLGDTPV EQIDPLCARL
AAIQVEPFLL PVERVGAFPP KASPRVIWVG VGSGHPRLHQ LRQKIDDAVL ACGLDADLRT
FHPHITLGRC QDGARNGVQQ WLRHHADFAG PSFRVDAFEL YASELHSAGA IHHLRQRFPL
GSGSTPPAP
|
|---|
| |