Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_1883 |
Symbol | |
ID | 6205280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 2344540 |
End bp | 2346966 |
Gene Length | 2427 bp |
Protein Length | 808 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641691531 |
Product | permease |
Protein accession | YP_001818766 |
Protein GI | 182413700 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.142413 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCGACC TCCGCTTCGC TCTCCGGCAA CTCGCCAAGG CTCCTGGCTT CACCGCCATC GCCGTGCTCT CGCTCGCGCT CGGCATCGGC GCCACCACCA CCGTGTTCTG CTGGATCCAA GGCATCCTGC TCAACCCGCT GCCCGGCGTG CACCGCCAGG AGGAGATCGT CGTGCTCACC ACCTCGCACG CGGACCAGAT GTGGGACACC TGTTCGCTGC CCGATATCAA GGACTATCGC GAACAGCGCG ACGTGTTCGC CGGCATCATC GCCTCGCAGG TCACGCCCGC CTGCCTGACC ATCGGCGAGC AGTCGACGTG GCTCTATGGC CAGATCGCGA CAGCAAACTT TTTCGACCTG CTCGGCGTGC AACCGCTGCT CGGCCGGCTG TTTCTCCCCG ACGAGGATCA GAAACCAGGC GGCAATCCGG TGCTCGTGCT CGGCGAGCGG TTCTGGCGAC GCCAGTTCAA CGGCGATCCG AGCGTGATCG GCAAGGCCGT TCAGCTCAAC CGCCACGCGT TCACGGTCAT CGGCGTCGCG CCGGCCTCCT TCCGCGGCAC GATGAGTGGA TTGATCTGCG ATTTCTGGGC GCCGCTCTCG ATGCACCACG CAGTGGCCAA CATGGGCTCG CTCGAGCAGC GCGACGATCA CTGGCTCCAC ACGCAAGCCC GGCTCCAACC CGGCGTCAGC CGCGAGCAGG CGCAGGCCGT CGTCGATGCC GTCGCCGCGC GCCTGGAGAA GTCTTATCCG AATACCAACC AGCAGATCCG ACTTCACGTG CTCGATTTCC TTCATGCGCC CTACGGGGTG CAGCCGATCA TGGGCCCGGT GCTGGCCATT CTGCTCGCCG TGAGTCTCGG CGTCGTGCTG ATCGTTGCCG CCAACCTCGC CAGCCTGCTG CTGGCGCGCG CCGCCGGCCG GCAAAAGGAA ATCGCCATCC GACTCGCCGT CGGCGCCAGC CGCGTCCGGC TCGTGCGCCA GCTGCTCACG GAAAGCCTGC TGCTCGCCGG CCTCGGCGGC GGACTCGGCA TCGTCATCGC GTTCTGGGCC GTGGATCTGC TGAAGCGCTG GCAGCCGCCG ACTCCGCTGC CGATTGGCAT CGGCACGGAG ATCAACACAA CCACGCTCGC GTTCACCGTA TGCGGCTCGA TCGTGACCGG CGTCCTGTTC GGATTGATCC CGGCCTTGCG CGCTTCCCGG CCCGACCTCA ACTCCACGCT GAAGGATGGC GGCCGCACGT CTTCCAGCGG TTCCTCGCAC CAGCGGTTGC GCAGTCTGCT CGTGCTCGGC GAAGTCGCGC TGTCGCTCGT CCTGCTCGTC GGCGCCGGCC TGTGCATCAA GAGCGCGCAA CGTGCCTACC ACGCCGAACT CGGTTTCAAA CCCGACCGCG TGCTGCTCGC CGGCCTCCGC ATCGGCATGA ACGGCTACAA CGAAGCCACC GGGAAAGTCT TCTACGCCCG GCTGCAGGAG CGGCTCGCCA GGCTGCCCGG CGTCGAGTCC GTCGCGCTCA GCAGCTGGTT CCCGCTGGGC TTCGAGGGCG GTCCGCAACA CGGCGTCACC GTCCAGGGCC ATGAACAAAA ACCCGGCGAG GATTCGAGCC TTCCCTACAG CATCGTGTCT CCGGGCTATT TCGCGACGCT CGGCATCCCG CTCGTCGACG GCCGCGACTT CACCGATCAC GACGACGACT CCGCGCTCAA GGTCGCGATC ATCAACGAAA CGATGGCGAA GCGGTATTGG CCCGGCCAGA ATGCGATCGG CCACAAATTC AAAGCCGCTT GGCGCGAGCT CACCGTGGTC GGCGTCGCGA AAGACGGAAA ATACCGGTCG CTCAACGAAC CGCCACGCGG TTTCTTCTAC ACCCCGTTCC GCCAGGGTGT GTGGGATCTC AATCTCGGAC TGTGCCTGCG CACCCGAGGC GATCCGTCGC TTTTCGGTGC CACGCTCCAG CGCGAGCTCC GCCAGCTCGA TCCCAACGTC GCGGTCTGGG CCACGATCAC GATGGACGAC TACATCAAGG CGGCGTTCAT GGCGCCGGTC CTCGCTTCGC GATTGCTCAC CTGGCTCGGG ATCGTCGCGC TCGTGCTCGC CGCCATGGGC GTCTACGGCG TGGTCGCCTA CGTCGTCAGC CAGCGCACGC AGGAATTCGG CGTGCGCATG GCGCTCGGCG CCAGCACCGG CGACGTGCTC CGACTGGTCA TCGGCCAGGG CATGCGCGTC GCCGTGTTGG GTATCGGCGT CGGCCTGCTC GGCGCGTTCG CCGTGACGCG CCTGCTCGCC GGCTTCCTCT ATGGTGTGAG CCCATTCGAC GCGCTCACCT TCGGTGCGGT CACGCTCGGC CTGGCGCTGG TGTCGCTTCT CGCCTGCTGG CTGCCGGCGC GTCGCGCAAC GAAAGTCGAT CCGGTTGACG CGCTACGAGC GGAATGA
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Protein sequence | MSDLRFALRQ LAKAPGFTAI AVLSLALGIG ATTTVFCWIQ GILLNPLPGV HRQEEIVVLT TSHADQMWDT CSLPDIKDYR EQRDVFAGII ASQVTPACLT IGEQSTWLYG QIATANFFDL LGVQPLLGRL FLPDEDQKPG GNPVLVLGER FWRRQFNGDP SVIGKAVQLN RHAFTVIGVA PASFRGTMSG LICDFWAPLS MHHAVANMGS LEQRDDHWLH TQARLQPGVS REQAQAVVDA VAARLEKSYP NTNQQIRLHV LDFLHAPYGV QPIMGPVLAI LLAVSLGVVL IVAANLASLL LARAAGRQKE IAIRLAVGAS RVRLVRQLLT ESLLLAGLGG GLGIVIAFWA VDLLKRWQPP TPLPIGIGTE INTTTLAFTV CGSIVTGVLF GLIPALRASR PDLNSTLKDG GRTSSSGSSH QRLRSLLVLG EVALSLVLLV GAGLCIKSAQ RAYHAELGFK PDRVLLAGLR IGMNGYNEAT GKVFYARLQE RLARLPGVES VALSSWFPLG FEGGPQHGVT VQGHEQKPGE DSSLPYSIVS PGYFATLGIP LVDGRDFTDH DDDSALKVAI INETMAKRYW PGQNAIGHKF KAAWRELTVV GVAKDGKYRS LNEPPRGFFY TPFRQGVWDL NLGLCLRTRG DPSLFGATLQ RELRQLDPNV AVWATITMDD YIKAAFMAPV LASRLLTWLG IVALVLAAMG VYGVVAYVVS QRTQEFGVRM ALGASTGDVL RLVIGQGMRV AVLGIGVGLL GAFAVTRLLA GFLYGVSPFD ALTFGAVTLG LALVSLLACW LPARRATKVD PVDALRAE
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