| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1875 |
|---|
| Symbol | |
|---|
| ID | 6205293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2329824 |
|---|
| End bp | 2332214 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641691523 |
|---|
| Product | permease |
|---|
| Protein accession | YP_001818758 |
|---|
| Protein GI | 182413692 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGCTG ATCTCCGCTT CGCTCTTCGC CAACTGCTGA AATCTCCCGG CTTCACCGCG
ATCGCCGTGC TCACGCTCGC GCTCGGGATC GGCGCCAACA CCGCGATCTT CAGCGTCGTC
AACGCCGTCC TCCTCCAGCC GCTGCCGTAT CCGGATCCGG ACCGGCTCGT GCAGATCGCC
GAAAACCGCG GCAACGGCGC TATCGGTGGC TCCGACGGCG GCGTGTTCCT CGATTGGCAG
AGCCAGACTA CTCAGATCGA TTTCATCGCG GCGTTCCACA ACATCGACCG CAACCTCACC
GCGGATGCCG ACCCCATCCG CGTCAGTGGC GGCGAGGTCT CCGCGCACTA CCTGGACGCC
CTGGGTGTGA AACCGCTGCT CGGCCGCGGT TTCGTCGAAG CCGACGATGC CCCCGGCGGC
AATCGCTACG TCGTCATCCT CAGCCACGAA TTCTGGCAGT CCTACTTTCG CGGCAACCCG
GCGATCCTCG ACCGCACCGT GCAGATGGAC GGACAGAATT ACACGATCAT CGGCGTGCTC
CCGCCCGGCG CGCTGCTCAC CAACACCGTC AACTTTCTCT CGCCGGCAAC GATCCGGACC
GACGAATACA AGACTCTGCG CAACTACAAC TACGGCTGCA ACGTCATCGG CCGGCTCAAA
CCCGGCGCCA CGGCCGAGCA GGCGACCGCC GAGCTTGCGA CCGCGCGTAA GGCCATCCTC
TCCGAGTATC CGAGTTTCCG GCAGAACTGG ACGGTAGCCG TCCGCTCGCT GCATGAATCG
ATCTACGGCA ACACCCGGCC GTTTCTCGTC ACGCTGCTCG CTGCGGTCGG CGCCGTGCTC
TTGATCGCCT GCGCCAACGT CGCGAATCTG CTCCTCGTCC GCGCGACGTC GCGTCAGGGC
GAAATCGCCG TCCGCGTCGC GATGGGCGCC AGCACCGCGC GAATCGTCCG GCAGTTCCTG
ACCGAAAGCC TGTTGATCGC TTTGCTCGGT GGAATCGCCG GCATCTTCGT GGGCCTGTGG
TCCATCAACC CGCTGCTGCG CTACACCGCG CTCAACACGA TCCCCGGCGT GAACGTCCAA
ATCGATCTGA CCGTGCTCGG CTTTACCGTT GGCGCCGCGG CCCTCACCGG TCTGCTGTTC
GGACTTTTCC CCGCGTTGAG CGCGGCTCGT CCCAACGTCC AGGGCGCGCT GAAGGAGGGC
ACGCGCGGCA CGAGCAGCGG TTCGCGCAAG CGGCTGCAGG GCGCCCTCGT CATCTCCGAA
ACCGCGCTCA CGGTCGTTCT CCTGGTCTGC GCTGGGCTCC TCCTCCGCAG CTTCATGCAG
GCGCTCAACG CCGACACGGG TTTCAACCGC GACAACGTTG CCTTCTTCAA CCTGACCCAG
CCCGCGAGCA AGGCGCCGAC CATCGCGCAT CGCACGCGCT TCATCGCCGA CGTGCTCCGT
AACCTGCGGC AGATTCCCGG CGTTTCGTTC GCGGGCATGG CCTCCTCCAC GCCGATGAAC
GGCCGCACGG GGTTCGGCGA CGTCGTCAGC CGCGAAGACC AACCCAACAC GCGCGACGAT
CTGCGCGCCG GCTTCGATTC GGCCGACGGC GAGTATTTCC AGACCTTCGG CATTCCGCTG
CTGCGCGGCC GGTTCTTCTC CGAAGCCGAC AACCGCGCAG AGGCGCCGCG CGTGATGATC
ATCAACGACA CGCTCGCCCG CCAGCTCTTC GGCGAGGCCG ACCCACTGGG CCAGTTGATC
CATTTCAAGG ACGCCGCGTG GGAGATCGTC GGCGTCGTCG GCAGCGTACG CCAGCTCCGG
CTCGACCTGA ATCCGTTCCC CCACCTCTAC GTGCCGCCGG TGCATTTCCC CTGGCACACG
ATGTTCGCCG TGCGGACGCA AGTCTCGCCG CTCACGCTCG CTGACGAGCT CCGCGGCGCC
GTACGTCAGG TCGATCCGCA GATCCCCATC GCGAACCTGA CGACACTTGA TCTGGCCGTG
GAGCGATCGC TGCAGGGCCG CCGCACGGTC ATGGGCCTGC TCGTAATCTT CGCCGCGGTG
GCGCTCGTGC TCGCCTGCAT CGGGATTTAC GGCGTCATGT CGTATTCCGT TTCTCAGCGC
ACGCGTGAGC TCGGGATTCG AATCGCGCTC GGCGCCGCCA CGCACCGCGT GTTGTCACTG
GTCCTGCACG ACGGACTAAA GCTCGTTCTG TTGGGGCTCA TGATCGGCAT CGCCGCGAGC
TTCGGTGCCG CGCAATTGAT CGCGAGCCAG CTTTACGCCA CGTCGCAGAC TGATTTCACC
GTGCTGCTCG CGGTCAGCCT GGTCCTGCTC GTCGTCGCGC TGCTGGCGTC GTGGCTCCCC
GCGCGCCGCG CCACGCGCGT CAATCCCGTC GAAGCACTCC GCGCCGAATA G
|
|---|
| Protein sequence | MCADLRFALR QLLKSPGFTA IAVLTLALGI GANTAIFSVV NAVLLQPLPY PDPDRLVQIA
ENRGNGAIGG SDGGVFLDWQ SQTTQIDFIA AFHNIDRNLT ADADPIRVSG GEVSAHYLDA
LGVKPLLGRG FVEADDAPGG NRYVVILSHE FWQSYFRGNP AILDRTVQMD GQNYTIIGVL
PPGALLTNTV NFLSPATIRT DEYKTLRNYN YGCNVIGRLK PGATAEQATA ELATARKAIL
SEYPSFRQNW TVAVRSLHES IYGNTRPFLV TLLAAVGAVL LIACANVANL LLVRATSRQG
EIAVRVAMGA STARIVRQFL TESLLIALLG GIAGIFVGLW SINPLLRYTA LNTIPGVNVQ
IDLTVLGFTV GAAALTGLLF GLFPALSAAR PNVQGALKEG TRGTSSGSRK RLQGALVISE
TALTVVLLVC AGLLLRSFMQ ALNADTGFNR DNVAFFNLTQ PASKAPTIAH RTRFIADVLR
NLRQIPGVSF AGMASSTPMN GRTGFGDVVS REDQPNTRDD LRAGFDSADG EYFQTFGIPL
LRGRFFSEAD NRAEAPRVMI INDTLARQLF GEADPLGQLI HFKDAAWEIV GVVGSVRQLR
LDLNPFPHLY VPPVHFPWHT MFAVRTQVSP LTLADELRGA VRQVDPQIPI ANLTTLDLAV
ERSLQGRRTV MGLLVIFAAV ALVLACIGIY GVMSYSVSQR TRELGIRIAL GAATHRVLSL
VLHDGLKLVL LGLMIGIAAS FGAAQLIASQ LYATSQTDFT VLLAVSLVLL VVALLASWLP
ARRATRVNPV EALRAE
|
|---|
| |