Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_1829 |
Symbol | |
ID | 6206299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 2277832 |
End bp | 2280225 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641691477 |
Product | permease |
Protein accession | YP_001818712 |
Protein GI | 182413646 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.752707 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTGATT TCCGCTTCGC CTTCCGCCAG CTCTTGAAGT CGCCGGGGTT TACCACCGTC GCCGTGCTCA CGCTCGCGAT CGGCATCGGC TCCGCAACCG CGATGTTCAG CGCGCTCCGC GCGCTCGTCG TCGAACCATT TTCCTATCCG AATTCCGCGC AACTCGCCCA CGTCTGGTCC GGCGACGGCT GGCCGCTCTC CCAACCTGAC TACTTCGACC TCGCCGATCG TTCGACGTCG TTCGCCGAAT TCGGCGTCTA CACGCCGCGA CCGGCGAATC TCGGTGGCGA CAATCCCGAG GTCGTGACGA GCGTCTCCGC CACTCCCGGC GTGCTGCGCG CTTTCGGCAT TCCGCCGCAG CTGGGTCGCT GGCTCGAGCC CGTTGATGAA GATTCCGGCG CGGCGCCGGT CGTGGTGATC AGCCACCGGC TTTGGCAACG TTCCTTCGCC GGCGATCCGG CGCTCGTTGG CCGCACGATC CGCATCAACG GCACGCTCAC CACCGTCGTC GGCATCATGC CGGCGAACTT CGAATTCGCC GCGCCGTGGA TGCGCGGCGA CACCTGCCAC ATGTGGCTGC CGCTGAAACT CAAGCGCGGC GAGGGTCACC GCGGCAGTCA CTGGATGTGC GGGATTGCCC GGCTCAAGCC CGGCGTGACC GTCCCTACCG CCGACGCGGA AATCAAGAGC ATCGGCGCCC AGCTCACCCA GGAATACCCG AACACGAACG CGCAGAAAAA ATTCCTCGTG CGCTCGCTGC ATTTCGAGAT GACGCGCTAC ATCGGCTCGC GCGTCTGGAT GCTGTTCGGC GCCGTCTCGC TCGTGCTGCT GGTCGCCTGC GCGAATGTCG CGAGCATGCT GCTCGCGCGC AGCGCCAAGC GGCAGGCCGA GTTCGGGGTC CGCATCGCCC TCGGCGCCAG CCGCCGCCAG ATCATCCGGC TGGCGCTGAG CGAAAGCGTG CTACTCTCGC TCGGCGGCGC GTTCGTCGGC CTCGTCTTCG CCTTCTACGG CGTGAAACTC CTCGCACTCA TCGCGCCGGT CAGCGAAGCC CGCCGCGCCG CCATGGGGCT CGACCTGCGC GTGCTCGCCT TCGCCGTCGG GGTCACCGGG CTCACCGCGC TGATCGCCGG CGTGCCGCCT GCGCTCGCCG CACTGCGCAT TTCCGTCGCC GACCTGCTGC GCACGGACAG CCGCGGCGCC GCCGGTTCGC GCACGCGTCA CAATCTGCTG CGCGGATTGA TCATCGGTCA GGTCACGATC GCGTTCGTGC TCGCCAACGG CGCCGCGTTG TTCTCCGCGA GTTACGTGAA ACTGTTCTCG GCCAACCGCG CGCTTTCCAC CGACCGCGTG TTGACGGCAC AACTGCATCT TCGGAGTGAA CGCTATTCCA AACGAGAGGC CCGCACGCAG TTTTGGGAGC AGCTGAGCGA GCGGCTCACG GCGCTGCCCG GCGTCACCGC CGCCGGCCTG GTCACTCAGC TGCCGCTGCA GGGTGGCAGC AACATGAACA TTCTGGTCAA CGACGAGGTC TTCGATCCGC TCGCACAACG CGCGCTCGCC GAGATCCGCG CGGTCACGCC GGGCTATTTC GCCGCGATCG GCGTGCCGCT CCTGCACGGC CGGACGCTGC AGCCCGGCGA CGCCGGCAAG GATGAGATCG GCGTGGTCGT GAACCGCGCA CTCGCCGACA AGTCCTGGCC CGGCAAGGAC CCGATTGGTC AACTCATCCG GCCCTCCAAC GAAAAGCCGG ATTATCAGGC GCGGGTCGTC GGTGTCGTTG ACAACCTCCG GCAGTGGGGA CCCGAGACCG ATCCGCGCCC CGAGATCTCG TGGACGCCGG ATCGCGCGTG GGGCAACAGT GTCTTTCTTG TCGTGCGCTC GCCGCAACCC GCCAGCCAGC TGACTGCCGC CGTGCGCGAT GCGGTGCAGG CGCTCGATCC CGACCTGCCG CTGGCGCAGA TTCGCACGAT GGAGGGCGTT GTCGACGAAT CGTTGGCCGG CCAGCGCGCC GTCGTGCAGC TGGTGGATTT CTTCATGGCC GTCACGCTCG GGCTGCTCGC CGTCGGTCTC TACGGCACGC TGTCGTATCA CGTGCTGCAA CGCACCCGCG AGATTGGCGT GCGGATGGCG ATGGGCGCCG CGACCGGCGA CGTGGTGAAA CTCGTGTTCC GGCAGGGCTC GGTTTGGCTG ACGATCGGCA TCGTGCTCGG CATCGGCGGC GCGGTGGCGC TCACGTTCGC GATCCGGACG CTGGTCTATG GACTGGAGTC CGTGGATCCG ATGGCGCTGG TGTGGGCCAC GCTCGCGGTG GCCGTCGCCG GCGCGATCGC CTGCTGGCTG CCGGCCCGCC GCGCCGCGCG CGTTGACCCG ATCATCGCGT TGCGAACGGA CTAG
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Protein sequence | MSDFRFAFRQ LLKSPGFTTV AVLTLAIGIG SATAMFSALR ALVVEPFSYP NSAQLAHVWS GDGWPLSQPD YFDLADRSTS FAEFGVYTPR PANLGGDNPE VVTSVSATPG VLRAFGIPPQ LGRWLEPVDE DSGAAPVVVI SHRLWQRSFA GDPALVGRTI RINGTLTTVV GIMPANFEFA APWMRGDTCH MWLPLKLKRG EGHRGSHWMC GIARLKPGVT VPTADAEIKS IGAQLTQEYP NTNAQKKFLV RSLHFEMTRY IGSRVWMLFG AVSLVLLVAC ANVASMLLAR SAKRQAEFGV RIALGASRRQ IIRLALSESV LLSLGGAFVG LVFAFYGVKL LALIAPVSEA RRAAMGLDLR VLAFAVGVTG LTALIAGVPP ALAALRISVA DLLRTDSRGA AGSRTRHNLL RGLIIGQVTI AFVLANGAAL FSASYVKLFS ANRALSTDRV LTAQLHLRSE RYSKREARTQ FWEQLSERLT ALPGVTAAGL VTQLPLQGGS NMNILVNDEV FDPLAQRALA EIRAVTPGYF AAIGVPLLHG RTLQPGDAGK DEIGVVVNRA LADKSWPGKD PIGQLIRPSN EKPDYQARVV GVVDNLRQWG PETDPRPEIS WTPDRAWGNS VFLVVRSPQP ASQLTAAVRD AVQALDPDLP LAQIRTMEGV VDESLAGQRA VVQLVDFFMA VTLGLLAVGL YGTLSYHVLQ RTREIGVRMA MGAATGDVVK LVFRQGSVWL TIGIVLGIGG AVALTFAIRT LVYGLESVDP MALVWATLAV AVAGAIACWL PARRAARVDP IIALRTD
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